RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF479Q96JC4 524 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 SHISA9B4DS77 424 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 C9JQL5 133 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 CRYGDP07320 174 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 CSN3P07498 182 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 SAA1P0DJI8 122 aaPredicted RBP3.28□□□□□ -1.88
USH2A-202ENST00000366942 FOXL2P58012 376 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 ERVS71-1P61550 626 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 TNFRSF9Q07011 255 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 TMEM255AQ5JRV8 349 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 ZNF705AQ6ZN79 300 aaPredicted RBP3.28□□□□□ -1.88
USH2A-202ENST00000366942 LINC00305Q7Z4B0 112 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 FNDC1Q4ZHG4 1894 aaPredicted RBP3.28□□□□□ -1.88
USH2A-202ENST00000366942 TRAV12-3A0A0B4J271 114 aa3.28□□□□□ -1.89
USH2A-202ENST00000366942 M0R2N4 97 aa3.28□□□□□ -1.89
USH2A-202ENST00000366942 SFT2D2O95562 160 aa3.28□□□□□ -1.89
USH2A-202ENST00000366942 PNRC1Q12796 327 aaPredicted RBP3.28□□□□□ -1.89
USH2A-202ENST00000366942 LINC01559Q495D7 138 aa3.28□□□□□ -1.89
USH2A-202ENST00000366942 Q6YL49 198 aa3.28□□□□□ -1.89
USH2A-202ENST00000366942 TYMSP04818 313 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 GIPP09681 153 aaPredicted RBP3.27□□□□□ -1.89
USH2A-202ENST00000366942 STAG3L3P0CL85 134 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 UBE2D2P62837 147 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 CD300LDQ6UXZ3 194 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 FER1L6-AS1Q8NA97 138 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 TEX37Q96LM6 180 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 CITED4Q96RK1 184 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 SOSTQ9BQB4 213 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 SLC25A39Q9BZJ4 359 aaPredicted RBP3.27□□□□□ -1.89
USH2A-202ENST00000366942 MRPS18AQ9NVS2 196 aaKnown RBP3.27□□□□□ -1.89
USH2A-202ENST00000366942 PI4KAP42356 2102 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 A6NDN8 102 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 G3V4G9 280 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 NDUFS5O43920 106 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 C9orf153Q5TBE3 101 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 TRPT1Q86TN4 253 aaKnown RBP3.27□□□□□ -1.89
USH2A-202ENST00000366942 CTHRC1Q96CG8 243 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 AJUBAQ96IF1 538 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 PNRC2Q9NPJ4 139 aaKnown RBP3.27□□□□□ -1.89
USH2A-202ENST00000366942 SCN11AQ9UI33 1791 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 TCHHQ07283 1943 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 M0R143 59 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 ITGB1BP1O14713 200 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 DYNAPQ8N1N2 210 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 NABP2Q9BQ15 211 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 SMPXQ9UHP9 88 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 TIAM2Q8IVF5 1701 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 FLNBO75369 2602 aaKnown RBP3.27□□□□□ -1.89
USH2A-202ENST00000366942 K7EP13 123 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 TMEM50AO95807 157 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 TCL1BO95988 128 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 VKORC1L1Q8N0U8 176 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 C9orf85Q96MD7 179 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 C8orf49Q96NF6 230 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 ZNF696Q9H7X3 374 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 ZNF319Q9P2F9 582 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 TECTAO75443 2155 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 C7orf71A4D174 169 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 H3BQ85 93 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 LINC00271P0C7V0 271 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 COX6B2Q6YFQ2 88 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 TP53RKQ96S44 253 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 FNDC4Q9H6D8 234 aaPredicted RBP3.27□□□□□ -1.89
USH2A-202ENST00000366942 TMEM242Q9NWH2 141 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 S4R3C0 116 aa3.27□□□□□ -1.89
USH2A-202ENST00000366942 TLN2Q9Y4G6 2542 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 PINLYPA6NC86 204 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 C15orf62A8K5M9 175 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 APOC3P02656 99 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 TTRP02766 147 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 SP6Q3SY56 376 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 SVBPQ8N300 66 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 PLEKHB2Q96CS7 222 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 FMC1Q96HJ9 113 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 CYTL1Q9NRR1 136 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 CSAG2Q9Y5P2 127 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 CACNA1FO60840 1977 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 ZNF638Q14966 1978 aaKnown RBP3.26□□□□□ -1.89
USH2A-202ENST00000366942 C7orf77A4D0Y5 90 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 FAM74A7A6NL05 159 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 PDZD11Q5EBL8 140 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 DPPA3Q6W0C5 159 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 LYPD1Q8N2G4 141 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 Q9H3A6 140 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 PSORS1C1Q9UIG5 152 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 TNCP24821 2201 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 IGLV2-18A0A075B6J9 118 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 I3L521 148 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 SAA2P0DJI9 122 aaPredicted RBP3.26□□□□□ -1.89
USH2A-202ENST00000366942 IGFBP6P24592 240 aaPredicted RBP3.26□□□□□ -1.89
USH2A-202ENST00000366942 CFHR3Q02985 330 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 C16orf54Q6UWD8 224 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 LINC01551Q86U37 167 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 LINC00311Q8N616 119 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 CD177Q8N6Q3 437 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 NIT2Q9NQR4 276 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 MYMXA0A1B0GTQ4 84 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 K7EMT4 169 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 IGHV3-30P01768 117 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 IGHV3-33P01772 117 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms