RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 LINC01006Q8NI28 216 aa14.35□□□□□ -0.11
CLN3-204ENST00000357857 TMEM250H0YL14 139 aa14.35□□□□□ -0.11
CLN3-204ENST00000357857 PDE6DO43924 150 aa14.35□□□□□ -0.11
CLN3-204ENST00000357857 NBEAP1P0C6P0 100 aa14.35□□□□□ -0.11
CLN3-204ENST00000357857 HIST1H1EP10412 219 aaKnown RBP14.35□□□□□ -0.11
CLN3-204ENST00000357857 LURAP1LQ8IV03 231 aa14.35□□□□□ -0.11
CLN3-204ENST00000357857 WIPF2Q8TF74 440 aaPredicted RBP14.35□□□□□ -0.11
CLN3-204ENST00000357857 BLNKQ8WV28 456 aa14.35□□□□□ -0.11
CLN3-204ENST00000357857 F8P00451 2351 aa14.34□□□□□ -0.11
CLN3-204ENST00000357857 F6UZH7 168 aa14.34□□□□□ -0.11
CLN3-204ENST00000357857 ZNF207O43670 478 aaKnown RBP14.34□□□□□ -0.11
CLN3-204ENST00000357857 SNRPCP09234 159 aaKnown RBP14.34□□□□□ -0.11
CLN3-204ENST00000357857 NPPCP23582 126 aa14.34□□□□□ -0.11
CLN3-204ENST00000357857 UNQ9165/PRO28630Q6UXU0 137 aa14.34□□□□□ -0.11
CLN3-204ENST00000357857 OR4F17Q8NGA8 305 aa14.34□□□□□ -0.11
CLN3-204ENST00000357857 MRPS12O15235 138 aaKnown RBP14.33□□□□□ -0.12
CLN3-204ENST00000357857 CRYBB3P26998 211 aa14.33□□□□□ -0.12
CLN3-204ENST00000357857 TCTEX1D4Q5JR98 221 aa14.33□□□□□ -0.12
CLN3-204ENST00000357857 FAM90A2PQ658T7 463 aa14.33□□□□□ -0.12
CLN3-204ENST00000357857 TMEM190Q8WZ59 177 aa14.33□□□□□ -0.12
CLN3-204ENST00000357857 H3BQ15 152 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 CUBNO60494 3623 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 RPL7P18124 248 aaKnown RBP14.32□□□□□ -0.12
CLN3-204ENST00000357857 CDX1P47902 265 aaPredicted RBP14.32□□□□□ -0.12
CLN3-204ENST00000357857 GUCA2BQ16661 112 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 OR8I2Q8N0Y5 310 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 NKX6-2Q9C056 277 aaPredicted RBP14.32□□□□□ -0.12
CLN3-204ENST00000357857 ZNF586Q9NXT0 402 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 U3KQE9 123 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 GGTLC3B5MD39 225 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 BUB3O43684 328 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 IGLC2P0DOY2 106 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 RPEL1Q2QD12 228 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 FAM106AQ4KMX7 169 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 KHDC1LQ5JSQ8 128 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 GPHB5Q86YW7 130 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 CCDC28AQ8IWP9 274 aa14.32□□□□□ -0.12
CLN3-204ENST00000357857 ZNF320A2RRD8 509 aa14.31□□□□□ -0.12
CLN3-204ENST00000357857 H3BTX0 84 aa14.31□□□□□ -0.12
CLN3-204ENST00000357857 RANP62826 216 aaKnown RBP14.31□□□□□ -0.12
CLN3-204ENST00000357857 SUMO1P63165 101 aaKnown RBP14.31□□□□□ -0.12
CLN3-204ENST00000357857 SVBPQ8N300 66 aa14.31□□□□□ -0.12
CLN3-204ENST00000357857 RPUSD4Q96CM3 377 aaKnown RBP14.31□□□□□ -0.12
CLN3-204ENST00000357857 IGHV4OR15-8A0A075B7B6 117 aa14.3□□□□□ -0.12
CLN3-204ENST00000357857 A0A087WW49 117 aa14.3□□□□□ -0.12
CLN3-204ENST00000357857 SCO2A0A1W2PP80 73 aa14.3□□□□□ -0.12
CLN3-204ENST00000357857 APOHP02749 345 aaPredicted RBP14.3□□□□□ -0.12
CLN3-204ENST00000357857 C1orf194Q5T5A4 169 aa14.3□□□□□ -0.12
CLN3-204ENST00000357857 C18orf65Q6ZTR6 163 aa14.3□□□□□ -0.12
CLN3-204ENST00000357857 C4orf3Q8WVX3 66 aa14.3□□□□□ -0.12
CLN3-204ENST00000357857 TRBV19A0A075B6N1 114 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 IGHV3-49A0A0A0MS15 119 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 IGHV3-66A0A0C4DH42 116 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 GPR82Q96P67 336 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 PARLQ9H300 379 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 NF1P21359 2839 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 IGHV3OR16-13A0A075B7E8 117 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 IGHV3-74A0A0B4J1X5 117 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 ZNF727A8MUV8 499 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 MYCNOSP40205 109 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 ZNF674Q2M3X9 581 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 WFDC12Q8WWY7 111 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 C11orf52Q96A22 123 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 ELOVL1Q9BW60 279 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 Q9H3A6 140 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 RNF114Q9Y508 228 aa14.29□□□□□ -0.12
CLN3-204ENST00000357857 HAX1O00165 279 aa14.28□□□□□ -0.12
CLN3-204ENST00000357857 NDUFB4O95168 129 aa14.28□□□□□ -0.12
CLN3-204ENST00000357857 ATF4P18848 351 aaPredicted RBP14.28□□□□□ -0.12
CLN3-204ENST00000357857 SRSF2Q01130 221 aaKnown RBP14.28□□□□□ -0.12
CLN3-204ENST00000357857 FAM74A3Q4VXF1 159 aa14.28□□□□□ -0.12
CLN3-204ENST00000357857 C17orf77Q96MU5 243 aa14.28□□□□□ -0.12
CLN3-204ENST00000357857 SMIM7Q9BQ49 75 aa14.28□□□□□ -0.12
CLN3-204ENST00000357857 NIPSNAP3BQ9BS92 247 aa14.28□□□□□ -0.12
CLN3-204ENST00000357857 DAZ1Q9NQZ3 744 aaKnown RBP14.28□□□□□ -0.12
CLN3-204ENST00000357857 SMAD5-AS1Q9Y6J3 95 aa14.28□□□□□ -0.12
CLN3-204ENST00000357857 PGPA6NDG6 321 aa14.27□□□□□ -0.12
CLN3-204ENST00000357857 K7EMT4 169 aa14.27□□□□□ -0.12
CLN3-204ENST00000357857 SNAPINO95295 136 aa14.27□□□□□ -0.12
CLN3-204ENST00000357857 CD28P10747 220 aa14.27□□□□□ -0.12
CLN3-204ENST00000357857 GALR1P47211 349 aa14.27□□□□□ -0.12
CLN3-204ENST00000357857 PDE6HQ13956 83 aa14.27□□□□□ -0.12
CLN3-204ENST00000357857 C16orf54Q6UWD8 224 aa14.27□□□□□ -0.12
CLN3-204ENST00000357857 KLHL30-AS1Q8NEE0 82 aa14.27□□□□□ -0.12
CLN3-204ENST00000357857 OTORQ9NRC9 128 aa14.27□□□□□ -0.12
CLN3-204ENST00000357857 UFC1Q9Y3C8 167 aa14.27□□□□□ -0.12
CLN3-204ENST00000357857 HOXD3P31249 432 aaPredicted RBP14.27□□□□□ -0.13
CLN3-204ENST00000357857 TM4SF20Q53R12 229 aa14.27□□□□□ -0.13
CLN3-204ENST00000357857 TCEAL7Q9BRU2 100 aa14.27□□□□□ -0.13
CLN3-204ENST00000357857 IGHV7-4-1A0A0J9YVY3 117 aa14.26□□□□□ -0.13
CLN3-204ENST00000357857 A0A1W2PS18 150 aa14.26□□□□□ -0.13
CLN3-204ENST00000357857 SLC25A5P05141 298 aaKnown RBP14.26□□□□□ -0.13
CLN3-204ENST00000357857 PROK1P58294 105 aa14.26□□□□□ -0.13
CLN3-204ENST00000357857 DEFB136Q30KP8 78 aa14.26□□□□□ -0.13
CLN3-204ENST00000357857 REC114Q7Z4M0 266 aa14.26□□□□□ -0.13
CLN3-204ENST00000357857 LYPD1Q8N2G4 141 aa14.26□□□□□ -0.13
CLN3-204ENST00000357857 C11orf44Q8N8P7 122 aa14.26□□□□□ -0.13
CLN3-204ENST00000357857 CLRN3Q8NCR9 226 aa14.26□□□□□ -0.13
CLN3-204ENST00000357857 GRAMD2BQ96HH9 432 aa14.26□□□□□ -0.13
CLN3-204ENST00000357857 DERL1Q9BUN8 251 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms