RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 SMAD7O15105 426 aaKnown RBP12.12□□□□□ -0.47
CHD4-201ENST00000357008 LINC00477Q96M19 166 aa12.12□□□□□ -0.47
CHD4-201ENST00000357008 GTSF1LQ9H1H1 148 aa12.12□□□□□ -0.47
CHD4-201ENST00000357008 SELENOKQ9Y6D0 94 aa12.12□□□□□ -0.47
CHD4-201ENST00000357008 TRAV8-1A0A0A6YYK1 113 aa12.12□□□□□ -0.47
CHD4-201ENST00000357008 RNASE2P10153 161 aaKnown RBP12.12□□□□□ -0.47
CHD4-201ENST00000357008 E9PLN8 166 aa12.12□□□□□ -0.47
CHD4-201ENST00000357008 ZNF672Q499Z4 452 aaPredicted RBP12.12□□□□□ -0.47
CHD4-201ENST00000357008 CHCHD5Q9BSY4 110 aa12.12□□□□□ -0.47
CHD4-201ENST00000357008 C2orf82Q6UX34 121 aa12.12□□□□□ -0.47
CHD4-201ENST00000357008 LILRA1O75019 489 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 MINOS1Q5TGZ0 78 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 MINOS1-NBL1R4GNA1 71 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 A0A1W2PRX2 142 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 SRD5A1P18405 259 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 TEX43Q6ZNM6 134 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 Q8TAT8 98 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 CHAC1Q9BUX1 264 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 LGALS1P09382 135 aaKnown RBP12.11□□□□□ -0.47
CHD4-201ENST00000357008 FHL1Q13642 323 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 WFDC12Q8WWY7 111 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 Q86TA4 180 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 AMN1Q8IY45 258 aa12.11□□□□□ -0.47
CHD4-201ENST00000357008 C5orf64Q2M2E5 130 aa12.1□□□□□ -0.47
CHD4-201ENST00000357008 OCIAD2Q56VL3 154 aa12.1□□□□□ -0.47
CHD4-201ENST00000357008 PHLDA1Q8WV24 401 aaPredicted RBP12.1□□□□□ -0.47
CHD4-201ENST00000357008 SIGLEC9Q9Y336 463 aa12.1□□□□□ -0.47
CHD4-201ENST00000357008 DOCK6Q96HP0 2047 aa12.1□□□□□ -0.47
CHD4-201ENST00000357008 SRRM4A7MD48 611 aaKnown RBP12.1□□□□□ -0.47
CHD4-201ENST00000357008 C20orf204Q6ZNR8 217 aa12.1□□□□□ -0.47
CHD4-201ENST00000357008 GAFA1Q96PS6 74 aa12.1□□□□□ -0.47
CHD4-201ENST00000357008 LINC00527Q9UJ94 153 aa12.1□□□□□ -0.47
CHD4-201ENST00000357008 LRRK1Q38SD2 2015 aa12.1□□□□□ -0.47
CHD4-201ENST00000357008 CSTL1Q9H114 145 aa12.1□□□□□ -0.47
CHD4-201ENST00000357008 TRBV7-1A0A0A6YYK4 115 aa12.09□□□□□ -0.47
CHD4-201ENST00000357008 S100A7L2Q5SY68 101 aa12.09□□□□□ -0.47
CHD4-201ENST00000357008 RASL10AQ92737 203 aa12.09□□□□□ -0.47
CHD4-201ENST00000357008 RCHY1Q96PM5 261 aa12.09□□□□□ -0.47
CHD4-201ENST00000357008 IGKV1D-17A0A075B6S4 117 aa12.09□□□□□ -0.47
CHD4-201ENST00000357008 LSM4Q9Y4Z0 139 aaKnown RBP12.09□□□□□ -0.47
CHD4-201ENST00000357008 LINC00205P59089 165 aa12.09□□□□□ -0.47
CHD4-201ENST00000357008 TRAV40A0A0B4J280 105 aa12.08□□□□□ -0.47
CHD4-201ENST00000357008 FAM231BA6NCW3 169 aa12.08□□□□□ -0.47
CHD4-201ENST00000357008 NPC2P61916 151 aa12.08□□□□□ -0.47
CHD4-201ENST00000357008 ZNF474Q6S9Z5 364 aaPredicted RBP12.08□□□□□ -0.47
CHD4-201ENST00000357008 VMO1Q7Z5L0 202 aa12.08□□□□□ -0.47
CHD4-201ENST00000357008 C18orf32Q8TCD1 76 aa12.08□□□□□ -0.47
CHD4-201ENST00000357008 MCRIP2Q9BUT9 160 aaKnown RBP12.08□□□□□ -0.47
CHD4-201ENST00000357008 ADAMTSL5Q6ZMM2 481 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 C14orf178Q8N769 122 aaPredicted RBP12.08□□□□□ -0.48
CHD4-201ENST00000357008 LINC00479Q96M42 142 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 SNHG12Q9BXW3 62 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 ZNF492Q9P255 531 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 ITGB1BP1O14713 200 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 GATD1Q8NB37 220 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 ANAPC10Q9UM13 185 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 SMKR1H3BMG3 65 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 BUB1B-PAK6H3BSN5 160 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 PDE6HQ13956 83 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 TMEM249Q2WGJ8 235 aa12.08□□□□□ -0.48
CHD4-201ENST00000357008 INTS1Q8N201 2190 aaKnown RBP12.08□□□□□ -0.48
CHD4-201ENST00000357008 LIME1Q9H400 295 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 WNK3Q9BYP7 1800 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 B3GALT5-AS1P59052 145 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 RPL36AP83881 106 aaKnown RBP12.07□□□□□ -0.48
CHD4-201ENST00000357008 RPL36ALQ969Q0 106 aaKnown RBP12.07□□□□□ -0.48
CHD4-201ENST00000357008 MED12Q93074 2177 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 CASP8AP2Q9UKL3 1982 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 PAX4O43316 350 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 TNFRSF6BO95407 300 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 MLANAQ16655 118 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 C10orf91Q5T1B1 145 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 SRSF8Q9BRL6 282 aaKnown RBP12.07□□□□□ -0.48
CHD4-201ENST00000357008 IGHV2-70P01814 119 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 SHANK2-AS3Q9BTD1 123 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 JPT2Q9H910 190 aa12.07□□□□□ -0.48
CHD4-201ENST00000357008 CT83Q5H943 113 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 IGKV1-6A0A0C4DH72 117 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 SPINK8P0C7L1 97 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 ARMS2P0C7Q2 107 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 DTX2Q86UW9 622 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 Q0VFX4 171 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 ZNF562Q6V9R5 426 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 STPG4Q8N801 248 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 OVOL2Q9BRP0 275 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 PRADC1Q9BSG0 188 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 SPTBN1Q01082 2364 aaKnown RBP12.06□□□□□ -0.48
CHD4-201ENST00000357008 CMC4P56277 68 aaPredicted RBP12.06□□□□□ -0.48
CHD4-201ENST00000357008 M0R1W7 72 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 KLRD1Q13241 179 aa12.06□□□□□ -0.48
CHD4-201ENST00000357008 CSRP1P21291 193 aaKnown RBP12.05□□□□□ -0.48
CHD4-201ENST00000357008 HIST1H4AP62805 103 aaKnown RBP12.05□□□□□ -0.48
CHD4-201ENST00000357008 ZNF415Q09FC8 603 aa12.05□□□□□ -0.48
CHD4-201ENST00000357008 MYMXA0A1B0GTQ4 84 aa12.05□□□□□ -0.48
CHD4-201ENST00000357008 CST9LQ9H4G1 147 aa12.05□□□□□ -0.48
CHD4-201ENST00000357008 A0A1B0GUS0 222 aa12.05□□□□□ -0.48
CHD4-201ENST00000357008 IGHV2-5P01817 119 aa12.05□□□□□ -0.48
CHD4-201ENST00000357008 ZNF688P0C7X2 276 aa12.05□□□□□ -0.48
CHD4-201ENST00000357008 IGKV1-16P04430 117 aa12.05□□□□□ -0.48
CHD4-201ENST00000357008 TMEM105Q8N8V8 129 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms