RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 C16orf92Q96LL3 132 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 UHRF2Q96PU4 802 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 SHANK2-AS3Q9BTD1 123 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 HIGD1AQ9Y241 93 aa13.29□□□□□ -0.28
CLN3-202ENST00000355477 L7N2F9 121 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 UPK1BO75841 260 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 OR5G3P0C626 314 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 MEOX2P50222 304 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 VAMP2P63027 116 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 IL15RAQ13261 267 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 IGFL4Q6B9Z1 124 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 OR4B1Q8NGF8 309 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 GPR82Q96P67 336 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 C1QTNF4Q9BXJ3 329 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 MFFQ9GZY8 342 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 ARL6Q9H0F7 186 aa13.28□□□□□ -0.28
CLN3-202ENST00000355477 A0A0J9YX75 114 aa13.27□□□□□ -0.29
CLN3-202ENST00000355477 BCAP31P51572 246 aa13.27□□□□□ -0.29
CLN3-202ENST00000355477 RAP2BP61225 183 aa13.27□□□□□ -0.29
CLN3-202ENST00000355477 FAM78BQ5VT40 261 aa13.27□□□□□ -0.29
CLN3-202ENST00000355477 ZNF709Q8N972 641 aa13.27□□□□□ -0.29
CLN3-202ENST00000355477 CLUHP3Q96NS8 147 aa13.27□□□□□ -0.29
CLN3-202ENST00000355477 GGACTQ9BVM4 153 aa13.27□□□□□ -0.29
CLN3-202ENST00000355477 PTTG2Q9NZH5 202 aa13.27□□□□□ -0.29
CLN3-202ENST00000355477 KMT2AQ03164 3969 aa13.27□□□□□ -0.29
CLN3-202ENST00000355477 TRAV8-2A0A0B4J237 113 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 FAM24AA6NFZ4 105 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 AGPAT2O15120 278 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 CST7O76096 145 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 LY6G6CO95867 125 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 S100A7P31151 101 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 SAMD13Q5VXD3 122 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 EBLN2Q6P2I7 272 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 MGST2Q99735 147 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 SLC35B3Q9H1N7 401 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 HRH4Q9H3N8 390 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 RPRMQ9NS64 109 aa13.26□□□□□ -0.29
CLN3-202ENST00000355477 GOSR2O14653 212 aa13.25□□□□□ -0.29
CLN3-202ENST00000355477 CAV2P51636 162 aa13.25□□□□□ -0.29
CLN3-202ENST00000355477 FGL1Q08830 312 aa13.25□□□□□ -0.29
CLN3-202ENST00000355477 RAB32Q13637 225 aa13.25□□□□□ -0.29
CLN3-202ENST00000355477 SPATA31B1PQ5VZV4 182 aa13.25□□□□□ -0.29
CLN3-202ENST00000355477 ZNF705AQ6ZN79 300 aaPredicted RBP13.25□□□□□ -0.29
CLN3-202ENST00000355477 RNF182Q8N6D2 247 aa13.25□□□□□ -0.29
CLN3-202ENST00000355477 ARV1Q9H2C2 271 aa13.25□□□□□ -0.29
CLN3-202ENST00000355477 RPL7P18124 248 aaKnown RBP13.24□□□□□ -0.29
CLN3-202ENST00000355477 HLA-DMBP28068 263 aa13.24□□□□□ -0.29
CLN3-202ENST00000355477 S100A10P60903 97 aa13.24□□□□□ -0.29
CLN3-202ENST00000355477 PSG9Q00887 426 aa13.24□□□□□ -0.29
CLN3-202ENST00000355477 ENKURQ8TC29 256 aa13.24□□□□□ -0.29
CLN3-202ENST00000355477 CELA1Q9UNI1 258 aa13.24□□□□□ -0.29
CLN3-202ENST00000355477 NRARPQ7Z6K4 114 aa13.23□□□□□ -0.29
CLN3-202ENST00000355477 ZNF546Q86UE3 836 aa13.23□□□□□ -0.29
CLN3-202ENST00000355477 LYRM2Q9NU23 88 aaPredicted RBP13.23□□□□□ -0.29
CLN3-202ENST00000355477 IGSF23A1L1A6 192 aa13.22□□□□□ -0.29
CLN3-202ENST00000355477 A8MTW9 85 aa13.22□□□□□ -0.29
CLN3-202ENST00000355477 ZNF705FA8MVS1 300 aaPredicted RBP13.22□□□□□ -0.29
CLN3-202ENST00000355477 MRPS12O15235 138 aaKnown RBP13.22□□□□□ -0.29
CLN3-202ENST00000355477 SIX6O95475 246 aa13.22□□□□□ -0.29
CLN3-202ENST00000355477 ZNF705DP0CH99 300 aaPredicted RBP13.22□□□□□ -0.29
CLN3-202ENST00000355477 ZNF705BP0CI00 300 aaPredicted RBP13.22□□□□□ -0.29
CLN3-202ENST00000355477 PVALBP20472 110 aaPredicted RBP13.22□□□□□ -0.29
CLN3-202ENST00000355477 PXDC1Q5TGL8 231 aa13.22□□□□□ -0.29
CLN3-202ENST00000355477 AMTNQ6UX39 209 aa13.22□□□□□ -0.29
CLN3-202ENST00000355477 C2CD4CQ8TF44 421 aa13.22□□□□□ -0.29
CLN3-202ENST00000355477 TMEM37Q8WXS4 190 aa13.22□□□□□ -0.29
CLN3-202ENST00000355477 IGHV3OR16-12A0A075B7B8 117 aa13.21□□□□□ -0.29
CLN3-202ENST00000355477 CAMLGP49069 296 aa13.21□□□□□ -0.29
CLN3-202ENST00000355477 Q6ZTC4 211 aa13.21□□□□□ -0.29
CLN3-202ENST00000355477 LINC00305Q7Z4B0 112 aa13.21□□□□□ -0.29
CLN3-202ENST00000355477 TMEM252Q8N6L7 170 aa13.21□□□□□ -0.29
CLN3-202ENST00000355477 NEU1Q99519 415 aa13.21□□□□□ -0.29
CLN3-202ENST00000355477 GPN1Q9HCN4 374 aaPredicted RBP13.21□□□□□ -0.29
CLN3-202ENST00000355477 EPPK1P58107 5090 aaKnown RBP13.2□□□□□ -0.3
CLN3-202ENST00000355477 A0A087X0K7 114 aa13.2□□□□□ -0.3
CLN3-202ENST00000355477 SNRPCP09234 159 aaKnown RBP13.2□□□□□ -0.3
CLN3-202ENST00000355477 PRB4P10163 310 aaPredicted RBP13.2□□□□□ -0.3
CLN3-202ENST00000355477 SULT1A1P50225 295 aa13.2□□□□□ -0.3
CLN3-202ENST00000355477 VWC2Q2TAL6 325 aa13.2□□□□□ -0.3
CLN3-202ENST00000355477 C12orf74Q32Q52 190 aa13.2□□□□□ -0.3
CLN3-202ENST00000355477 MORN5Q5VZ52 161 aa13.2□□□□□ -0.3
CLN3-202ENST00000355477 ZNF767PQ75MW2 155 aa13.2□□□□□ -0.3
CLN3-202ENST00000355477 S100A7AQ86SG5 101 aa13.2□□□□□ -0.3
CLN3-202ENST00000355477 C1orf158Q8N1D5 194 aa13.2□□□□□ -0.3
CLN3-202ENST00000355477 UQCC1Q9NVA1 299 aa13.2□□□□□ -0.3
CLN3-202ENST00000355477 WDR83OSQ9Y284 106 aa13.2□□□□□ -0.3
CLN3-202ENST00000355477 IGLL5B9A064 214 aa13.19□□□□□ -0.3
CLN3-202ENST00000355477 C11orf94C9JXX5 98 aa13.19□□□□□ -0.3
CLN3-202ENST00000355477 INMT-MINDY4F8WBC2 141 aa13.19□□□□□ -0.3
CLN3-202ENST00000355477 COX7A2P2O60397 106 aa13.19□□□□□ -0.3
CLN3-202ENST00000355477 CXCL3P19876 107 aa13.19□□□□□ -0.3
CLN3-202ENST00000355477 S100A11P31949 105 aa13.19□□□□□ -0.3
CLN3-202ENST00000355477 CNN1P51911 297 aaKnown RBP13.19□□□□□ -0.3
CLN3-202ENST00000355477 MIC13Q5XKP0 118 aa13.19□□□□□ -0.3
CLN3-202ENST00000355477 ZNF738Q8NE65 137 aa13.19□□□□□ -0.3
CLN3-202ENST00000355477 SMIM9A6NGZ8 99 aa13.18□□□□□ -0.3
CLN3-202ENST00000355477 PRR20EP86478 221 aa13.18□□□□□ -0.3
CLN3-202ENST00000355477 PRR20CP86479 221 aa13.18□□□□□ -0.3
CLN3-202ENST00000355477 PRR20DP86480 221 aa13.18□□□□□ -0.3
CLN3-202ENST00000355477 PRR20BP86481 221 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms