RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 RNF125Q96EQ8 232 aa8.15□□□□□ -1.1
LIMA1-201ENST00000341247 ODF3BA8MYP8 253 aa8.15□□□□□ -1.1
LIMA1-201ENST00000341247 M0R1W7 72 aa8.15□□□□□ -1.1
LIMA1-201ENST00000341247 IGFL4Q6B9Z1 124 aa8.15□□□□□ -1.1
LIMA1-201ENST00000341247 PVRIGQ6DKI7 326 aa8.15□□□□□ -1.1
LIMA1-201ENST00000341247 WDR73Q6P4I2 378 aa8.15□□□□□ -1.1
LIMA1-201ENST00000341247 DAZAP1Q96EP5 407 aaKnown RBP8.15□□□□□ -1.1
LIMA1-201ENST00000341247 ZNF491Q8N8L2 437 aa8.15□□□□□ -1.11
LIMA1-201ENST00000341247 GRAMD2BQ96HH9 432 aa8.15□□□□□ -1.11
LIMA1-201ENST00000341247 TMUB1Q9BVT8 246 aa8.15□□□□□ -1.11
LIMA1-201ENST00000341247 TPPP3Q9BW30 176 aa8.15□□□□□ -1.11
LIMA1-201ENST00000341247 NDUFB8O95169 186 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 P01737 135 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 HIST1H1EP10412 219 aaKnown RBP8.14□□□□□ -1.11
LIMA1-201ENST00000341247 SIGLECL1Q8N7X8 197 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 NOL4LQ96MY1 436 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-201ENST00000341247 FANCD2OSQ96PS1 177 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 RNF5Q99942 180 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 MYO18BQ8IUG5 2567 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 FOXA3P55318 350 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-201ENST00000341247 DTX2Q86UW9 622 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 POLR3KQ9Y2Y1 108 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-201ENST00000341247 IGHV3OR16-13A0A075B7E8 117 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 IGHV3-74A0A0B4J1X5 117 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 M0QZ24 198 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 OR4F17Q8NGA8 305 aa8.14□□□□□ -1.11
LIMA1-201ENST00000341247 TBL2Q9Y4P3 447 aaKnown RBP8.14□□□□□ -1.11
LIMA1-201ENST00000341247 CSPG4Q6UVK1 2322 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 NDUFA3O95167 84 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 HLA-DQA1P01909 254 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 COL8A1P27658 744 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 BPIFA4PQ86YQ2 179 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 ITLN2Q8WWU7 325 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-201ENST00000341247 MBD6Q96DN6 1003 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 C7orf69Q9H7B7 122 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 MRPL27Q9P0M9 148 aaKnown RBP8.13□□□□□ -1.11
LIMA1-201ENST00000341247 PAM16Q9Y3D7 125 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 POLQO75417 2590 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 HLA-DRB1P01911 266 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 BRS3P32247 399 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 PLP1P60201 277 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 NPBQ8NG41 125 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 TSKUQ8WUA8 353 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 LINC00527Q9UJ94 153 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 TRBV9A0A0B4J1U6 114 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 A8MWP6 167 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 MT-ND6P03923 174 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 ZNF562Q6V9R5 426 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 SHANK2-AS3Q9BTD1 123 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 RPP21Q9H633 154 aaKnown RBP8.13□□□□□ -1.11
LIMA1-201ENST00000341247 C21orf62Q9NYP8 219 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 FBXL7Q9UJT9 491 aa8.13□□□□□ -1.11
LIMA1-201ENST00000341247 FAM208BQ5VWN6 2430 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 TMSB15BA0A087X1C1 80 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 IGHV3-66A0A0C4DH42 116 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 LINC01548A6NM66 108 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 TOMM40O96008 361 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 SAA4P35542 130 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 CCDC144NLQ6NUI1 221 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 TMEM219Q86XT9 240 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 GTSF1Q8WW33 167 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 OTORQ9NRC9 128 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 TIMM8BQ9Y5J9 83 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-201ENST00000341247 A0A1B0GV90 55 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 A0A1W2PS18 150 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 MFAP4P55083 255 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 Q86TA4 180 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 FMC1Q96HJ9 113 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 AKAP9Q99996 3911 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 TRBV19A0A075B6N1 114 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 IGHV3-49A0A0A0MS15 119 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 MUC21A0A0G2JKD1 596 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 MUC21A0A140T8X8 626 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 G3V318 75 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 LTAP01374 205 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 EFNA4P52798 201 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 MUC21Q5SSG8 566 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 RNASEKQ6P5S7 137 aaKnown RBP8.12□□□□□ -1.11
LIMA1-201ENST00000341247 FAM231DQ6ZW35 169 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 REC114Q7Z4M0 266 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 CHRDL1Q9BU40 450 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 MLST8Q9BVC4 326 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 KLF12Q9Y4X4 402 aa8.12□□□□□ -1.11
LIMA1-201ENST00000341247 IGLV11-55A0A075B6I3 123 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 IGHV7-81A0A0B4J1V7 117 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 H3BRN7 92 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 PAFAH1B2P68402 229 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 Q0VG73 95 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 PMCHL1Q16048 86 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 UNQ5815/PRO19632Q6UWF5 114 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 ATOH7Q8N100 152 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 SIRPDQ9H106 197 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 NRN1Q9NPD7 142 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 MXRA5Q9NR99 2828 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 GPX1P07203 203 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 GPR183P32249 361 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 C18orf32Q8TCD1 76 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 RNF224P0DH78 156 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 BRD3OSQ6XYD6 125 aa8.11□□□□□ -1.11
LIMA1-201ENST00000341247 IGHV2-70DA0A0C4DH43 119 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms