RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 BRD3OSQ6XYD6 125 aa13.5□□□□□ -0.25
PHRF1-201ENST00000264555 LYPD6BQ8NI32 183 aa13.5□□□□□ -0.25
PHRF1-201ENST00000264555 SMIM12Q96EX1 92 aa13.5□□□□□ -0.25
PHRF1-201ENST00000264555 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.49□□□□□ -0.25
PHRF1-201ENST00000264555 DKK4Q9UBT3 224 aa13.49□□□□□ -0.25
PHRF1-201ENST00000264555 DUSP14O95147 198 aaKnown RBP13.49□□□□□ -0.25
PHRF1-201ENST00000264555 PFN1P07737 140 aaKnown RBP13.49□□□□□ -0.25
PHRF1-201ENST00000264555 ST6GALNAC6Q969X2 333 aa13.49□□□□□ -0.25
PHRF1-201ENST00000264555 DUX3Q96PT4 197 aa13.49□□□□□ -0.25
PHRF1-201ENST00000264555 TNFRSF18Q9Y5U5 241 aa13.49□□□□□ -0.25
PHRF1-201ENST00000264555 H3BUX3 64 aa13.49□□□□□ -0.25
PHRF1-201ENST00000264555 TRAV8-6A0A0B4J262 113 aa13.49□□□□□ -0.25
PHRF1-201ENST00000264555 CNTFRP26992 372 aa13.49□□□□□ -0.25
PHRF1-201ENST00000264555 PPIFP30405 207 aaKnown RBP13.49□□□□□ -0.25
PHRF1-201ENST00000264555 UBE2E1P51965 193 aa13.49□□□□□ -0.25
PHRF1-201ENST00000264555 TMEM256Q8N2U0 113 aa13.49□□□□□ -0.25
PHRF1-201ENST00000264555 ITLN2Q8WWU7 325 aaPredicted RBP13.49□□□□□ -0.25
PHRF1-201ENST00000264555 FBLN7Q53RD9 439 aa13.48□□□□□ -0.25
PHRF1-201ENST00000264555 CD7P09564 240 aa13.48□□□□□ -0.25
PHRF1-201ENST00000264555 SLX1AQ9BQ83 275 aa13.48□□□□□ -0.25
PHRF1-201ENST00000264555 PDE6HQ13956 83 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 LINC00479Q96M42 142 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 LDLRAD2Q5SZI1 272 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 TRAV8-1A0A0A6YYK1 113 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 PF4P02776 101 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 PRB4P10163 310 aaPredicted RBP13.47□□□□□ -0.25
PHRF1-201ENST00000264555 USMG5Q96IX5 58 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 TMEM131Q92545 1883 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 FAM223BA6NKX1 122 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 WT1-ASQ06250 92 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 SRSF1Q07955 248 aaKnown RBP eCLIP13.47□□□□□ -0.257e-7■■■□□ 15
PHRF1-201ENST00000264555 PYY3Q5JQD4 70 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 FAM223AQ8IWN6 122 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 CADP27708 2225 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 TTC28Q96AY4 2481 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 LHBP01229 141 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 C9orf139Q6ZV77 190 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 LAMTOR2Q9Y2Q5 125 aa13.47□□□□□ -0.25
PHRF1-201ENST00000264555 H3BVH4 76 aa13.46□□□□□ -0.25
PHRF1-201ENST00000264555 LCN12Q6JVE5 192 aa13.46□□□□□ -0.25
PHRF1-201ENST00000264555 LOC107984156A0A0G2JMH3 177 aa13.46□□□□□ -0.25
PHRF1-201ENST00000264555 K7EM74 188 aa13.46□□□□□ -0.25
PHRF1-201ENST00000264555 NDUFS8O00217 210 aa13.46□□□□□ -0.25
PHRF1-201ENST00000264555 ZNF138P52744 262 aa13.46□□□□□ -0.25
PHRF1-201ENST00000264555 LYZL1Q6UWQ5 148 aa13.46□□□□□ -0.25
PHRF1-201ENST00000264555 ARL17AQ8IVW1 177 aa13.46□□□□□ -0.25
PHRF1-201ENST00000264555 GEMIN7Q9H840 131 aaKnown RBP13.46□□□□□ -0.25
PHRF1-201ENST00000264555 YPEL3P61236 119 aaPredicted RBP13.46□□□□□ -0.25
PHRF1-201ENST00000264555 TMEM170BQ5T4T1 132 aa13.46□□□□□ -0.25
PHRF1-201ENST00000264555 Q86TA4 180 aa13.46□□□□□ -0.25
PHRF1-201ENST00000264555 C8orf31Q8N9H6 132 aa13.46□□□□□ -0.26
PHRF1-201ENST00000264555 PEF1Q9UBV8 284 aaKnown RBP13.46□□□□□ -0.26
PHRF1-201ENST00000264555 SNAI2O43623 268 aa13.45□□□□□ -0.26
PHRF1-201ENST00000264555 SMIM13P0DJ93 91 aa13.45□□□□□ -0.26
PHRF1-201ENST00000264555 SLC25A2Q9BXI2 301 aa13.45□□□□□ -0.26
PHRF1-201ENST00000264555 MUC22E2RYF6 1773 aaPredicted RBP13.45□□□□□ -0.26
PHRF1-201ENST00000264555 SRRM4A7MD48 611 aaKnown RBP13.45□□□□□ -0.26
PHRF1-201ENST00000264555 SH2D1AO60880 128 aa13.45□□□□□ -0.26
PHRF1-201ENST00000264555 TCF15Q12870 199 aa13.45□□□□□ -0.26
PHRF1-201ENST00000264555 PRSS2P07478 247 aa13.45□□□□□ -0.26
PHRF1-201ENST00000264555 COX6CP09669 75 aa13.45□□□□□ -0.26
PHRF1-201ENST00000264555 LINC01587Q99440 93 aa13.45□□□□□ -0.26
PHRF1-201ENST00000264555 ST20Q9HBF5 79 aa13.45□□□□□ -0.26
PHRF1-201ENST00000264555 MRPL27Q9P0M9 148 aaKnown RBP13.45□□□□□ -0.26
PHRF1-201ENST00000264555 CYYR1Q96J86 154 aa13.44□□□□□ -0.26
PHRF1-201ENST00000264555 GFRA4Q9GZZ7 299 aa13.44□□□□□ -0.26
PHRF1-201ENST00000264555 YLPM1P49750 1951 aaKnown RBP13.44□□□□□ -0.26
PHRF1-201ENST00000264555 FAM181BA6NEQ2 426 aa13.44□□□□□ -0.26
PHRF1-201ENST00000264555 ZNF418Q8TF45 676 aaPredicted RBP13.44□□□□□ -0.26
PHRF1-201ENST00000264555 PRO3102Q9H379 93 aa13.44□□□□□ -0.26
PHRF1-201ENST00000264555 YAE1D1Q9NRH1 226 aa13.44□□□□□ -0.26
PHRF1-201ENST00000264555 TTC9CQ8N5M4 171 aa13.44□□□□□ -0.26
PHRF1-201ENST00000264555 FAM110DQ8TAY7 271 aaPredicted RBP13.44□□□□□ -0.26
PHRF1-201ENST00000264555 SHISA9B4DS77 424 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 SLC25A16P16260 332 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 CIRBPQ14011 172 aaKnown RBP13.43□□□□□ -0.26
PHRF1-201ENST00000264555 PCNX1Q96RV3 2341 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 ORMDL2Q53FV1 153 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 TECTAO75443 2155 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 USF3Q68DE3 2245 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 DIAPH2-AS1Q14236 149 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 VWC2Q2TAL6 325 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 Q8TAT8 98 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 PSMB11A5LHX3 300 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 D6R8Y8 96 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 TPSG1Q9NRR2 321 aa13.43□□□□□ -0.26
PHRF1-201ENST00000264555 SRD5A1P18405 259 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 LINC00477Q96M19 166 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 IGHV2-70DA0A0C4DH43 119 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 A6NNC1 897 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 NDPQ00604 133 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 C1orf194Q5T5A4 169 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 ZNF492Q9P255 531 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 NDUFB8O95169 186 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 EVI2AP22794 236 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 IFI27L1Q96BM0 104 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 GGTLC3B5MD39 225 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 H7C2G1 150 aa13.42□□□□□ -0.26
PHRF1-201ENST00000264555 SPTAN1Q13813 2472 aaKnown RBP13.42□□□□□ -0.26
PHRF1-201ENST00000264555 GTF3C1Q12789 2109 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms