RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PRRX1P54821 245 aa16.92■□□□□ 0.3
TRIM28-201ENST00000253024 STPG4Q8N801 248 aa16.92■□□□□ 0.3
TRIM28-201ENST00000253024 FAM181BA6NEQ2 426 aa16.91■□□□□ 0.3
TRIM28-201ENST00000253024 F11RQ9Y624 299 aaKnown RBP16.91■□□□□ 0.3
TRIM28-201ENST00000253024 CCL21O00585 134 aa16.91■□□□□ 0.3
TRIM28-201ENST00000253024 IGLV1-47P01700 117 aa16.91■□□□□ 0.3
TRIM28-201ENST00000253024 IGLC1P0CG04 106 aa16.91■□□□□ 0.3
TRIM28-201ENST00000253024 ZNF672Q499Z4 452 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-201ENST00000253024 C7orf69Q9H7B7 122 aa16.91■□□□□ 0.3
TRIM28-201ENST00000253024 BTF3P20290 206 aaKnown RBP16.9■□□□□ 0.3
TRIM28-201ENST00000253024 TMEM30BQ3MIR4 351 aa16.9■□□□□ 0.3
TRIM28-201ENST00000253024 ASCL5Q7RTU5 278 aa16.9■□□□□ 0.3
TRIM28-201ENST00000253024 OR4A5Q8NH83 315 aa16.9■□□□□ 0.3
TRIM28-201ENST00000253024 NGBQ9NPG2 151 aa16.9■□□□□ 0.3
TRIM28-201ENST00000253024 CUBNO60494 3623 aa16.9■□□□□ 0.3
TRIM28-201ENST00000253024 CHEK1O14757 476 aa16.9■□□□□ 0.3
TRIM28-201ENST00000253024 MYCNOSP40205 109 aa16.9■□□□□ 0.3
TRIM28-201ENST00000253024 ETFRF1Q6IPR1 90 aa16.9■□□□□ 0.3
TRIM28-201ENST00000253024 URB1-AS1Q96HZ7 61 aa16.9■□□□□ 0.3
TRIM28-201ENST00000253024 IGHV3OR16-13A0A075B7E8 117 aa16.89■□□□□ 0.3
TRIM28-201ENST00000253024 IGHV3-74A0A0B4J1X5 117 aa16.89■□□□□ 0.3
TRIM28-201ENST00000253024 hDV102S1A0JD36 115 aa16.89■□□□□ 0.3
TRIM28-201ENST00000253024 ATP5IP56385 69 aaPredicted RBP16.89■□□□□ 0.3
TRIM28-201ENST00000253024 C5orf17Q8NAS9 161 aa16.89■□□□□ 0.3
TRIM28-201ENST00000253024 C8orf46Q8TAG6 207 aa16.89■□□□□ 0.3
TRIM28-201ENST00000253024 RBM14Q96PK6 669 aaKnown RBP16.89■□□□□ 0.3
TRIM28-201ENST00000253024 IGKV1-17P01599 117 aa16.89■□□□□ 0.29
TRIM28-201ENST00000253024 HBBP68871 147 aa16.89■□□□□ 0.29
TRIM28-201ENST00000253024 IGF2-ASQ6U949 168 aa16.89■□□□□ 0.29
TRIM28-201ENST00000253024 LINC00311Q8N616 119 aa16.89■□□□□ 0.29
TRIM28-201ENST00000253024 OR4B1Q8NGF8 309 aa16.89■□□□□ 0.29
TRIM28-201ENST00000253024 SNAI2O43623 268 aa16.89■□□□□ 0.29
TRIM28-201ENST00000253024 NDUFS7O75251 213 aa16.89■□□□□ 0.29
TRIM28-201ENST00000253024 TMEM116Q8NCL8 245 aa16.89■□□□□ 0.29
TRIM28-201ENST00000253024 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.88■□□□□ 0.292e-9■■■■■ 30.3
TRIM28-201ENST00000253024 TEX45Q8NA69 505 aa16.88■□□□□ 0.29
TRIM28-201ENST00000253024 TRGV9Q99603 122 aa16.88■□□□□ 0.29
TRIM28-201ENST00000253024 IGLC2P0DOY2 106 aa16.88■□□□□ 0.29
TRIM28-201ENST00000253024 IGLC3P0DOY3 106 aa16.88■□□□□ 0.29
TRIM28-201ENST00000253024 LOC389332A0A1B0GUA5 103 aa16.87■□□□□ 0.29
TRIM28-201ENST00000253024 CRYGCP07315 174 aa16.87■□□□□ 0.29
TRIM28-201ENST00000253024 C8orf49Q96NF6 230 aa16.87■□□□□ 0.29
TRIM28-201ENST00000253024 SELENOKQ9Y6D0 94 aa16.87■□□□□ 0.29
TRIM28-201ENST00000253024 ARMS2P0C7Q2 107 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 IGLL1P15814 213 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 UNQ5815/PRO19632Q6UWF5 114 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 ZC2HC1AQ96GY0 325 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 SERTM2A0A1B0GWG4 89 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 CTRLP40313 264 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 DMRTA1Q5VZB9 504 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 JKAMPQ9P055 326 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 IGHV3-66A0A0C4DH42 116 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 A8MWL6 223 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 B9A039 149 aa16.86■□□□□ 0.29
TRIM28-201ENST00000253024 Q86TA4 180 aa16.85■□□□□ 0.29
TRIM28-201ENST00000253024 MLST8Q9BVC4 326 aa16.85■□□□□ 0.29
TRIM28-201ENST00000253024 KAAG1Q9UBP8 84 aa16.85■□□□□ 0.29
TRIM28-201ENST00000253024 FAM231DQ6ZW35 169 aa16.85■□□□□ 0.29
TRIM28-201ENST00000253024 I3L2K1 104 aa16.84■□□□□ 0.29
TRIM28-201ENST00000253024 STXBP6Q8NFX7 210 aa16.84■□□□□ 0.29
TRIM28-201ENST00000253024 GOLT1BQ9Y3E0 138 aa16.84■□□□□ 0.29
TRIM28-201ENST00000253024 TCF21O43680 179 aa16.84■□□□□ 0.29
TRIM28-201ENST00000253024 TOMM40O96008 361 aa16.84■□□□□ 0.29
TRIM28-201ENST00000253024 CRYGBP07316 175 aa16.84■□□□□ 0.29
TRIM28-201ENST00000253024 HLA-DMBP28068 263 aa16.84■□□□□ 0.29
TRIM28-201ENST00000253024 HTR1DP28221 377 aa16.84■□□□□ 0.29
TRIM28-201ENST00000253024 Q8TAT8 98 aa16.84■□□□□ 0.29
TRIM28-201ENST00000253024 IGHV3-49A0A0A0MS15 119 aa16.83■□□□□ 0.29
TRIM28-201ENST00000253024 K7EIM0 57 aa16.83■□□□□ 0.29
TRIM28-201ENST00000253024 LTAP01374 205 aa16.83■□□□□ 0.29
TRIM28-201ENST00000253024 UQCR10Q9UDW1 63 aa16.83■□□□□ 0.29
TRIM28-201ENST00000253024 GNG7O60262 68 aa16.83■□□□□ 0.28
TRIM28-201ENST00000253024 CRYBG3Q68DQ2 2970 aa16.83■□□□□ 0.28
TRIM28-201ENST00000253024 LAMTOR2Q9Y2Q5 125 aa16.83■□□□□ 0.28
TRIM28-201ENST00000253024 OR2T8A6NH00 312 aa16.83■□□□□ 0.28
TRIM28-201ENST00000253024 CA7P43166 264 aa16.83■□□□□ 0.28
TRIM28-201ENST00000253024 DYNAPQ8N1N2 210 aa16.83■□□□□ 0.28
TRIM28-201ENST00000253024 OR8B3Q8NGG8 313 aa16.83■□□□□ 0.28
TRIM28-201ENST00000253024 IGKV2-40A0A087WW87 121 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-201ENST00000253024 IGHV1-24A0A0C4DH33 117 aa16.82■□□□□ 0.28
TRIM28-201ENST00000253024 INS-IGF2F8WCM5 200 aa16.82■□□□□ 0.28
TRIM28-201ENST00000253024 DLEU1O43261 78 aa16.82■□□□□ 0.28
TRIM28-201ENST00000253024 OR2J3O76001 311 aa16.82■□□□□ 0.28
TRIM28-201ENST00000253024 IGKV2D-40P01614 121 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-201ENST00000253024 NDPQ00604 133 aa16.82■□□□□ 0.28
TRIM28-201ENST00000253024 ZNF596Q8TC21 504 aa16.82■□□□□ 0.28
TRIM28-201ENST00000253024 FMC1Q96HJ9 113 aa16.82■□□□□ 0.28
TRIM28-201ENST00000253024 CSMD2Q7Z408 3487 aa16.82■□□□□ 0.28
TRIM28-201ENST00000253024 A0A1B0GXF2 115 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 C2orf70A6NJV1 201 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 ZNF785A8K8V0 405 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 FAM106CPP0CH98 169 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 RBPJQ06330 500 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 FAM106AQ4KMX7 169 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 WFDC3Q8IUB2 231 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 TMUB1Q9BVT8 246 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 CENPEQ02224 2701 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 OR4C46A6NHA9 309 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 IGLV2-11P01706 119 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 COX19Q49B96 90 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms