RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ZDHHC15Q96MV8 337 aa12.83□□□□□ -0.36
TRIM28-210ENST00000597618 PARK7Q99497 189 aaKnown RBP12.83□□□□□ -0.36
TRIM28-210ENST00000597618 ZNF341Q9BYN7 854 aa12.83□□□□□ -0.36
TRIM28-210ENST00000597618 PRKRIP1Q9H875 184 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-210ENST00000597618 MAST3O60307 1309 aa12.83□□□□□ -0.36
TRIM28-210ENST00000597618 GRM8O00222 908 aa12.82□□□□□ -0.36
TRIM28-210ENST00000597618 FRAT2O75474 233 aaPredicted RBP12.82□□□□□ -0.36
TRIM28-210ENST00000597618 FCGRTP55899 365 aa12.82□□□□□ -0.36
TRIM28-210ENST00000597618 CHAF1AQ13111 956 aaPredicted RBP12.82□□□□□ -0.36
TRIM28-210ENST00000597618 GRIK5Q16478 980 aa12.82□□□□□ -0.36
TRIM28-210ENST00000597618 U2AF1L4Q8WU68 220 aaKnown RBP12.82□□□□□ -0.36
TRIM28-210ENST00000597618 MRIQ9BWK5 157 aa12.82□□□□□ -0.36
TRIM28-210ENST00000597618 KCNH4Q9UQ05 1017 aa12.82□□□□□ -0.36
TRIM28-210ENST00000597618 IL16Q14005 1332 aa12.82□□□□□ -0.36
TRIM28-210ENST00000597618 MROH5Q6ZUA9 1318 aa12.82□□□□□ -0.36
TRIM28-210ENST00000597618 F6X3S4 739 aa12.81□□□□□ -0.36
TRIM28-210ENST00000597618 CAPN2P17655 700 aa12.81□□□□□ -0.36
TRIM28-210ENST00000597618 PRKCZQ05513 592 aa12.81□□□□□ -0.36
TRIM28-210ENST00000597618 CAVIN4Q5BKX8 364 aa12.81□□□□□ -0.36
TRIM28-210ENST00000597618 FBXO33Q7Z6M2 555 aa12.81□□□□□ -0.36
TRIM28-210ENST00000597618 WWC1Q8IX03 1113 aa12.81□□□□□ -0.36
TRIM28-210ENST00000597618 SUGT1Q9Y2Z0 365 aa12.81□□□□□ -0.36
TRIM28-210ENST00000597618 EVI5O60447 810 aa12.8□□□□□ -0.36
TRIM28-210ENST00000597618 INPP5BP32019 993 aa12.8□□□□□ -0.36
TRIM28-210ENST00000597618 APOBEC3HQ6NTF7 200 aaKnown RBP12.8□□□□□ -0.36
TRIM28-210ENST00000597618 MIGA2Q7L4E1 593 aa12.8□□□□□ -0.36
TRIM28-210ENST00000597618 C9orf78Q9NZ63 289 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-210ENST00000597618 IQSEC3Q9UPP2 1182 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-210ENST00000597618 FANCIQ9NVI1 1328 aa12.8□□□□□ -0.36
TRIM28-210ENST00000597618 SOX1O00570 391 aaPredicted RBP12.79□□□□□ -0.36
TRIM28-210ENST00000597618 SGPL1O95470 568 aa12.79□□□□□ -0.36
TRIM28-210ENST00000597618 BCRP11274 1271 aa12.79□□□□□ -0.36
TRIM28-210ENST00000597618 MOGSQ13724 837 aa12.79□□□□□ -0.36
TRIM28-210ENST00000597618 HHIPL2Q6UWX4 724 aa12.79□□□□□ -0.36
TRIM28-210ENST00000597618 PUS3Q9BZE2 481 aaKnown RBP12.79□□□□□ -0.36
TRIM28-210ENST00000597618 UNC93B1Q9H1C4 597 aa12.79□□□□□ -0.36
TRIM28-210ENST00000597618 ALDH1L1O75891 902 aa12.78□□□□□ -0.36
TRIM28-210ENST00000597618 MNX1P50219 401 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-210ENST00000597618 NOL9Q5SY16 702 aaKnown RBP12.78□□□□□ -0.36
TRIM28-210ENST00000597618 FAM151AQ8WW52 585 aa12.78□□□□□ -0.36
TRIM28-210ENST00000597618 ZNF112Q9UJU3 913 aa12.78□□□□□ -0.36
TRIM28-210ENST00000597618 UNC80Q8N2C7 3258 aa12.78□□□□□ -0.36
TRIM28-210ENST00000597618 CACNA1FO60840 1977 aa12.78□□□□□ -0.36
TRIM28-210ENST00000597618 CXCL11O14625 94 aa12.77□□□□□ -0.37
TRIM28-210ENST00000597618 ADCY3O60266 1144 aa12.77□□□□□ -0.37
TRIM28-210ENST00000597618 VAMP4O75379 141 aa12.77□□□□□ -0.37
TRIM28-210ENST00000597618 INHAP05111 366 aa12.77□□□□□ -0.37
TRIM28-210ENST00000597618 CYP2C8P10632 490 aa12.77□□□□□ -0.37
TRIM28-210ENST00000597618 METTL24Q5JXM2 366 aa12.77□□□□□ -0.37
TRIM28-210ENST00000597618 PXYLP1Q8TE99 480 aa12.77□□□□□ -0.37
TRIM28-210ENST00000597618 LRCH3Q96II8 777 aa12.77□□□□□ -0.37
TRIM28-210ENST00000597618 KIF16BQ96L93 1317 aa12.77□□□□□ -0.37
TRIM28-210ENST00000597618 TFRCP02786 760 aaKnown RBP12.76□□□□□ -0.37
TRIM28-210ENST00000597618 NCBP3Q53F19 620 aaKnown RBP12.76□□□□□ -0.37
TRIM28-210ENST00000597618 GPAT2Q6NUI2 795 aa12.76□□□□□ -0.37
TRIM28-210ENST00000597618 GPR153Q6NV75 609 aa12.76□□□□□ -0.37
TRIM28-210ENST00000597618 FASTKD5Q7L8L6 764 aaKnown RBP12.76□□□□□ -0.37
TRIM28-210ENST00000597618 SUCLG2Q96I99 432 aa12.76□□□□□ -0.37
TRIM28-210ENST00000597618 DEFB118Q96PH6 123 aa12.76□□□□□ -0.37
TRIM28-210ENST00000597618 SRCIN1Q9C0H9 1055 aa12.76□□□□□ -0.37
TRIM28-210ENST00000597618 STAP2Q9UGK3 403 aa12.76□□□□□ -0.37
TRIM28-210ENST00000597618 GABRQQ9UN88 632 aa12.76□□□□□ -0.37
TRIM28-210ENST00000597618 PDE8BO95263 885 aa12.75□□□□□ -0.37
TRIM28-210ENST00000597618 ELNP15502 786 aa12.75□□□□□ -0.37
TRIM28-210ENST00000597618 FLT3LGP49771 235 aa12.75□□□□□ -0.37
TRIM28-210ENST00000597618 BCAMP50895 628 aa12.75□□□□□ -0.37
TRIM28-210ENST00000597618 IRF5Q13568 498 aa12.75□□□□□ -0.37
TRIM28-210ENST00000597618 VGLL2Q8N8G2 317 aa12.75□□□□□ -0.37
TRIM28-210ENST00000597618 PAK6Q9NQU5 681 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-210ENST00000597618 SLC45A1Q9Y2W3 748 aa12.75□□□□□ -0.37
TRIM28-210ENST00000597618 A0A0G2JLL6 359 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-210ENST00000597618 TNPO2O14787 897 aaKnown RBP12.74□□□□□ -0.37
TRIM28-210ENST00000597618 EXOSC9Q06265 439 aaKnown RBP12.74□□□□□ -0.37
TRIM28-210ENST00000597618 TCP10Q12799 353 aa12.74□□□□□ -0.37
TRIM28-210ENST00000597618 PUM3Q15397 648 aaKnown RBP12.74□□□□□ -0.37
TRIM28-210ENST00000597618 LRRC24Q50LG9 513 aa12.74□□□□□ -0.37
TRIM28-210ENST00000597618 CDC42EP5Q6NZY7 148 aa12.74□□□□□ -0.37
TRIM28-210ENST00000597618 SLC4A10Q6U841 1118 aa12.74□□□□□ -0.37
TRIM28-210ENST00000597618 PRRT2Q7Z6L0 340 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-210ENST00000597618 WDR66Q8TBY9 1149 aa12.74□□□□□ -0.37
TRIM28-210ENST00000597618 KAZALD1Q96I82 304 aa12.74□□□□□ -0.37
TRIM28-210ENST00000597618 CRISPLD2Q9H0B8 497 aa12.74□□□□□ -0.37
TRIM28-210ENST00000597618 PICK1Q9NRD5 415 aa12.74□□□□□ -0.37
TRIM28-210ENST00000597618 DAGLAQ9Y4D2 1042 aa12.74□□□□□ -0.37
TRIM28-210ENST00000597618 UTYO14607 1347 aa12.73□□□□□ -0.37
TRIM28-210ENST00000597618 IFIT1P09914 478 aaKnown RBP12.73□□□□□ -0.37
TRIM28-210ENST00000597618 BMP8BP34820 402 aa12.73□□□□□ -0.37
TRIM28-210ENST00000597618 ZEB1P37275 1124 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-210ENST00000597618 NFIAQ12857 509 aa12.73□□□□□ -0.37
TRIM28-210ENST00000597618 RABL6Q3YEC7 729 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-210ENST00000597618 NECAB2Q7Z6G3 386 aa12.73□□□□□ -0.37
TRIM28-210ENST00000597618 SCYL3Q8IZE3 742 aa12.73□□□□□ -0.37
TRIM28-210ENST00000597618 SMCR8Q8TEV9 937 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-210ENST00000597618 PAWRQ96IZ0 340 aaKnown RBP12.73□□□□□ -0.37
TRIM28-210ENST00000597618 GDF15Q99988 308 aa12.73□□□□□ -0.37
TRIM28-210ENST00000597618 BICC1Q9H694 974 aaKnown RBP12.73□□□□□ -0.37
TRIM28-210ENST00000597618 NBPF7P0C2Y1 421 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-210ENST00000597618 GADL1Q6ZQY3 521 aa12.72□□□□□ -0.37
TRIM28-210ENST00000597618 WDR63Q8IWG1 891 aa12.72□□□□□ -0.37
TRIM28-210ENST00000597618 DEFB123Q8N688 67 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms