RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 AKAP2Q9Y2D5 859 aa17.58■□□□□ 0.4
UPF1-204ENST00000596842 IFIT3O14879 490 aaKnown RBP17.57■□□□□ 0.4
UPF1-204ENST00000596842 BRAPQ7Z569 592 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 TBC1D10CQ8IV04 446 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 CCDC191Q8NCU4 936 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 ZCRB1Q8TBF4 217 aaKnown RBP17.57■□□□□ 0.4
UPF1-204ENST00000596842 A0A1W2PQ27 194 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 A0A1W2PQ64 194 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 A0A1W2PQD8 194 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 KARSQ15046 597 aaKnown RBP17.57■□□□□ 0.4
UPF1-204ENST00000596842 LONRF3Q496Y0 759 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 TEX35Q5T0J7 233 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.57■□□□□ 0.42e-6■■■□□ 15
UPF1-204ENST00000596842 PALLDQ8WX93 1383 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 hCG_1642624A0A1W2PR95 340 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 ZBTB43O43298 467 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 MB21D2Q8IYB1 491 aaPredicted RBP17.57■□□□□ 0.4
UPF1-204ENST00000596842 DESI2Q9BSY9 194 aa17.57■□□□□ 0.4
UPF1-204ENST00000596842 ANGEL1Q9UNK9 670 aaKnown RBP17.57■□□□□ 0.4
UPF1-204ENST00000596842 SEC31AO94979 1220 aaKnown RBP17.56■□□□□ 0.4
UPF1-204ENST00000596842 GNG11P61952 73 aa17.56■□□□□ 0.4
UPF1-204ENST00000596842 AGXT2Q9BYV1 514 aa17.56■□□□□ 0.4
UPF1-204ENST00000596842 CRYBG1Q9Y4K1 1723 aa17.56■□□□□ 0.4
UPF1-204ENST00000596842 MCAMP43121 646 aa17.56■□□□□ 0.4
UPF1-204ENST00000596842 MYL5Q02045 173 aa17.56■□□□□ 0.4
UPF1-204ENST00000596842 JMYQ8N9B5 988 aa17.56■□□□□ 0.4
UPF1-204ENST00000596842 PCDHA5Q9Y5H7 936 aa17.56■□□□□ 0.4
UPF1-204ENST00000596842 MARF1Q9Y4F3 1742 aaKnown RBP17.56■□□□□ 0.4
UPF1-204ENST00000596842 FOXP2O15409 715 aa17.56■□□□□ 0.4
UPF1-204ENST00000596842 COBLO75128 1261 aa17.56■□□□□ 0.4
UPF1-204ENST00000596842 AXDND1Q5T1B0 1012 aaPredicted RBP17.56■□□□□ 0.4
UPF1-204ENST00000596842 SHC4Q6S5L8 630 aa17.56■□□□□ 0.4
UPF1-204ENST00000596842 CMA1P23946 247 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 STX17P56962 302 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 CCDC102BQ68D86 513 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 BTBD18B2RXH4 712 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 EVA1CP58658 441 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 KIF6Q6ZMV9 814 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 C19orf44Q9H6X5 657 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 GREM2Q9H772 168 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.55■□□□□ 0.4
UPF1-204ENST00000596842 ITGA6P23229 1130 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 NCAPHQ15003 741 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 SLC39A14Q15043 492 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 CCDC34Q96HJ3 373 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 OSBPL5Q9H0X9 879 aaPredicted RBP17.55■□□□□ 0.4
UPF1-204ENST00000596842 IMPACTQ9P2X3 320 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 KCNH3Q9ULD8 1083 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 SLC12A7Q9Y666 1083 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 ZNF532Q9HCE3 1301 aa17.55■□□□□ 0.4
UPF1-204ENST00000596842 DNAJC10Q8IXB1 793 aa17.54■□□□□ 0.4
UPF1-204ENST00000596842 KIF2AO00139 706 aaPredicted RBP17.54■□□□□ 0.4
UPF1-204ENST00000596842 CLCN6P51797 869 aa17.54■□□□□ 0.4
UPF1-204ENST00000596842 NAPBQ9H115 298 aa17.54■□□□□ 0.4
UPF1-204ENST00000596842 WWC3Q9ULE0 1092 aa17.54■□□□□ 0.4
UPF1-204ENST00000596842 TBC1D2BQ9UPU7 963 aa17.54■□□□□ 0.4
UPF1-204ENST00000596842 POLR2DO15514 142 aaKnown RBP17.54■□□□□ 0.4
UPF1-204ENST00000596842 ZFYP08048 801 aaPredicted RBP17.54■□□□□ 0.4
UPF1-204ENST00000596842 GRIN1Q05586 938 aa17.54■□□□□ 0.4
UPF1-204ENST00000596842 N4BP2Q86UW6 1770 aaPredicted RBP17.54■□□□□ 0.4
UPF1-204ENST00000596842 AFMP43652 599 aa17.53■□□□□ 0.4
UPF1-204ENST00000596842 PHKA1P46020 1223 aa17.53■□□□□ 0.4
UPF1-204ENST00000596842 APOA5Q6Q788 366 aa17.53■□□□□ 0.4
UPF1-204ENST00000596842 MIGA1Q8NAN2 632 aa17.53■□□□□ 0.4
UPF1-204ENST00000596842 ETF1P62495 437 aaKnown RBP17.53■□□□□ 0.4
UPF1-204ENST00000596842 SAFBQ15424 915 aaKnown RBP eCLIP17.53■□□□□ 0.4
UPF1-204ENST00000596842 TMCO3Q6UWJ1 677 aa17.53■□□□□ 0.4
UPF1-204ENST00000596842 TRMT112Q9UI30 125 aaKnown RBP17.53■□□□□ 0.4
UPF1-204ENST00000596842 SYCP1Q15431 976 aa17.53■□□□□ 0.4
UPF1-204ENST00000596842 PIH1D3Q9NQM4 214 aaKnown RBP17.53■□□□□ 0.4
UPF1-204ENST00000596842 TDO2P48775 406 aa17.52■□□□□ 0.4
UPF1-204ENST00000596842 PDE4BQ07343 736 aa17.52■□□□□ 0.4
UPF1-204ENST00000596842 STAMQ92783 540 aa17.52■□□□□ 0.4
UPF1-204ENST00000596842 ARMT1Q9H993 441 aa17.52■□□□□ 0.4
UPF1-204ENST00000596842 ZNF446Q9NWS9 450 aa17.52■□□□□ 0.4
UPF1-204ENST00000596842 MORC2Q9Y6X9 1032 aaPredicted RBP17.52■□□□□ 0.4
UPF1-204ENST00000596842 CDKL5O76039 1030 aa17.52■□□□□ 0.4
UPF1-204ENST00000596842 CASP1P29466 404 aa17.52■□□□□ 0.4
UPF1-204ENST00000596842 GUCY1A2P33402 732 aa17.52■□□□□ 0.4
UPF1-204ENST00000596842 SECISBP2LQ93073 1101 aaKnown RBP17.52■□□□□ 0.4
UPF1-204ENST00000596842 NOL10Q9BSC4 688 aaKnown RBP17.52■□□□□ 0.4
UPF1-204ENST00000596842 LZTFL1Q9NQ48 299 aa17.52■□□□□ 0.4
UPF1-204ENST00000596842 MINDY4BA8MYZ0 360 aa17.52■□□□□ 0.39
UPF1-204ENST00000596842 NR5A1Q13285 461 aa17.52■□□□□ 0.39
UPF1-204ENST00000596842 GPR108Q9NPR9 543 aa17.52■□□□□ 0.39
UPF1-204ENST00000596842 NFE2L3Q9Y4A8 694 aa17.52■□□□□ 0.39
UPF1-204ENST00000596842 CBFA2T2O43439 604 aa17.51■□□□□ 0.39
UPF1-204ENST00000596842 SSRP1Q08945 709 aaKnown RBP17.51■□□□□ 0.39
UPF1-204ENST00000596842 TERF2Q15554 542 aa17.51■□□□□ 0.39
UPF1-204ENST00000596842 MAGEB6Q8N7X4 407 aa17.51■□□□□ 0.39
UPF1-204ENST00000596842 ASAP1Q9ULH1 1129 aa17.51■□□□□ 0.39
UPF1-204ENST00000596842 LMO7Q8WWI1 1683 aa17.51■□□□□ 0.39
UPF1-204ENST00000596842 SLFN14P0C7P3 912 aa17.51■□□□□ 0.39
UPF1-204ENST00000596842 NEDD4P46934 1319 aa17.51■□□□□ 0.39
UPF1-204ENST00000596842 RFX7Q2KHR2 1363 aa17.51■□□□□ 0.39
UPF1-204ENST00000596842 TCIRG1Q13488 830 aa17.51■□□□□ 0.39
UPF1-204ENST00000596842 HLFQ16534 295 aa17.51■□□□□ 0.39
UPF1-204ENST00000596842 METTL16Q86W50 562 aaKnown RBP17.51■□□□□ 0.39
UPF1-204ENST00000596842 ARGLU1Q9NWB6 273 aaPredicted RBP17.51■□□□□ 0.39
UPF1-204ENST00000596842 TMOD3Q9NYL9 352 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms