RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 WDHD1O75717 1129 aaPredicted RBP26.45■■□□□ 1.82
VPS53-211ENST00000571805 RXRAP19793 462 aa26.45■■□□□ 1.82
VPS53-211ENST00000571805 RBM6P78332 1123 aaKnown RBP26.45■■□□□ 1.82
VPS53-211ENST00000571805 DPCR1Q3MIW9 517 aa26.45■■□□□ 1.82
VPS53-211ENST00000571805 FBXW7Q969H0 707 aa26.45■■□□□ 1.82
VPS53-211ENST00000571805 CDKL5O76039 1030 aa26.44■■□□□ 1.82
VPS53-211ENST00000571805 NTRK3Q16288 839 aa26.44■■□□□ 1.82
VPS53-211ENST00000571805 SPATA5Q8NB90 893 aa26.44■■□□□ 1.82
VPS53-211ENST00000571805 AIDAQ96BJ3 306 aa26.44■■□□□ 1.82
VPS53-211ENST00000571805 C16orf45Q96MC5 204 aaPredicted RBP26.44■■□□□ 1.82
VPS53-211ENST00000571805 KRT40Q6A162 431 aa26.44■■□□□ 1.82
VPS53-211ENST00000571805 SGMS1Q86VZ5 419 aa26.44■■□□□ 1.82
VPS53-211ENST00000571805 LY9Q9HBG7 655 aa26.44■■□□□ 1.82
VPS53-211ENST00000571805 INCENPQ9NQS7 918 aa26.44■■□□□ 1.82
VPS53-211ENST00000571805 ECM29Q5VYK3 1845 aa26.44■■□□□ 1.82
VPS53-211ENST00000571805 DOCK2Q92608 1830 aa26.44■■□□□ 1.82
VPS53-211ENST00000571805 PATL2C9JE40 543 aaKnown RBP26.43■■□□□ 1.82
VPS53-211ENST00000571805 CTIFO43310 598 aaKnown RBP26.43■■□□□ 1.82
VPS53-211ENST00000571805 PFKFB1P16118 471 aa26.43■■□□□ 1.82
VPS53-211ENST00000571805 AK7Q96M32 723 aa26.43■■□□□ 1.82
VPS53-211ENST00000571805 EPB41L4AQ9HCS5 686 aaPredicted RBP26.43■■□□□ 1.82
VPS53-211ENST00000571805 FAM217BQ9NTX9 383 aaPredicted RBP26.43■■□□□ 1.82
VPS53-211ENST00000571805 SLC3A2P08195 630 aaKnown RBP26.43■■□□□ 1.82
VPS53-211ENST00000571805 VPS37DQ86XT2 251 aa26.43■■□□□ 1.82
VPS53-211ENST00000571805 PHKBQ93100 1093 aa26.43■■□□□ 1.82
VPS53-211ENST00000571805 IFNL3Q8IZI9 196 aa26.42■■□□□ 1.82
VPS53-211ENST00000571805 SYTL4Q96C24 671 aaPredicted RBP26.42■■□□□ 1.82
VPS53-211ENST00000571805 MROH7-TTC4A0A0A0MT08 1334 aa26.42■■□□□ 1.82
VPS53-211ENST00000571805 ZBTB43O43298 467 aa26.42■■□□□ 1.82
VPS53-211ENST00000571805 MICU3Q86XE3 530 aa26.42■■□□□ 1.82
VPS53-211ENST00000571805 TACC3Q9Y6A5 838 aa26.42■■□□□ 1.82
VPS53-211ENST00000571805 EXOC5O00471 708 aa26.41■■□□□ 1.82
VPS53-211ENST00000571805 TNNT1P13805 278 aa26.41■■□□□ 1.82
VPS53-211ENST00000571805 RASGRF1Q13972 1273 aa26.41■■□□□ 1.82
VPS53-211ENST00000571805 CPLX2Q6PUV4 134 aaKnown RBP26.41■■□□□ 1.82
VPS53-211ENST00000571805 NBPF11Q86T75 865 aa26.41■■□□□ 1.82
VPS53-211ENST00000571805 RANBP6O60518 1105 aaKnown RBP26.41■■□□□ 1.82
VPS53-211ENST00000571805 MARCKSP29966 332 aaPredicted RBP26.41■■□□□ 1.82
VPS53-211ENST00000571805 NLRP12P59046 1061 aa26.41■■□□□ 1.82
VPS53-211ENST00000571805 PTPAQ15257 358 aa26.41■■□□□ 1.82
VPS53-211ENST00000571805 SUSD4Q5VX71 490 aa26.41■■□□□ 1.82
VPS53-211ENST00000571805 COL14A1Q05707 1796 aaKnown RBP26.4■■□□□ 1.82
VPS53-211ENST00000571805 SNAP23O00161 211 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 SLC5A1P13866 664 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 LIFRP42702 1097 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 MAGEB6Q8N7X4 407 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 ZSWIM5Q9P217 1185 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 CHD4Q14839 1912 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 PPP6R2O75170 966 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 U2AF2P26368 475 aaKnown RBP eCLIP26.4■■□□□ 1.82
VPS53-211ENST00000571805 EIF5P55010 431 aaKnown RBP26.4■■□□□ 1.82
VPS53-211ENST00000571805 CCZ1BP86790 482 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 CCZ1P86791 482 aaPredicted RBP26.4■■□□□ 1.82
VPS53-211ENST00000571805 TPD52L1Q16890 204 aaPredicted RBP26.4■■□□□ 1.82
VPS53-211ENST00000571805 TMEM67Q5HYA8 995 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 FILIP1Q7Z7B0 1213 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 TIGD1Q96MW7 591 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 MAP3K14Q99558 947 aa26.4■■□□□ 1.82
VPS53-211ENST00000571805 PLCH1Q4KWH8 1693 aa26.39■■□□□ 1.82
VPS53-211ENST00000571805 CCDC69A6NI79 296 aa26.39■■□□□ 1.82
VPS53-211ENST00000571805 MBD4O95243 580 aa26.39■■□□□ 1.82
VPS53-211ENST00000571805 IARSP41252 1262 aaKnown RBP26.39■■□□□ 1.82
VPS53-211ENST00000571805 CTDSPL2Q05D32 466 aa26.39■■□□□ 1.82
VPS53-211ENST00000571805 MAP3K12Q12852 859 aa26.39■■□□□ 1.82
VPS53-211ENST00000571805 HPSEQ9Y251 543 aa26.39■■□□□ 1.82
VPS53-211ENST00000571805 SKILP12757 684 aa26.39■■□□□ 1.81
VPS53-211ENST00000571805 ZRSR1Q15695 479 aaKnown RBP26.39■■□□□ 1.81
VPS53-211ENST00000571805 NFXL1Q6ZNB6 911 aa26.39■■□□□ 1.81
VPS53-211ENST00000571805 MYL10Q9BUA6 226 aa26.39■■□□□ 1.81
VPS53-211ENST00000571805 GOLGA8AA7E2F4 631 aa26.38■■□□□ 1.81
VPS53-211ENST00000571805 SMTNL1A8MU46 457 aa26.38■■□□□ 1.81
VPS53-211ENST00000571805 NAPBQ9H115 298 aa26.38■■□□□ 1.81
VPS53-211ENST00000571805 ARMT1Q9H993 441 aa26.38■■□□□ 1.81
VPS53-211ENST00000571805 GSG1L2A8MUP6 293 aa26.38■■□□□ 1.81
VPS53-211ENST00000571805 BIN1O00499 593 aa26.38■■□□□ 1.81
VPS53-211ENST00000571805 SHC4Q6S5L8 630 aa26.38■■□□□ 1.81
VPS53-211ENST00000571805 SEC31BQ9NQW1 1179 aa26.38■■□□□ 1.81
VPS53-211ENST00000571805 FAM237AA0A1B0GTK4 181 aa26.37■■□□□ 1.81
VPS53-211ENST00000571805 NCAPHQ15003 741 aa26.37■■□□□ 1.81
VPS53-211ENST00000571805 CCDC94Q9BW85 323 aaPredicted RBP26.37■■□□□ 1.81
VPS53-211ENST00000571805 OSBPL5Q9H0X9 879 aaPredicted RBP26.37■■□□□ 1.81
VPS53-211ENST00000571805 TIAM2Q8IVF5 1701 aa26.37■■□□□ 1.81
VPS53-211ENST00000571805 USP27XA6NNY8 438 aa26.36■■□□□ 1.81
VPS53-211ENST00000571805 INTS5Q6P9B9 1019 aaKnown RBP26.36■■□□□ 1.81
VPS53-211ENST00000571805 ANKRD7Q92527 254 aa26.36■■□□□ 1.81
VPS53-211ENST00000571805 GNL3Q9BVP2 549 aaKnown RBP eCLIP26.36■■□□□ 1.81
VPS53-211ENST00000571805 PAXBP1Q9Y5B6 917 aa26.36■■□□□ 1.81
VPS53-211ENST00000571805 UBE2Q2LH0YL09 131 aa26.36■■□□□ 1.81
VPS53-211ENST00000571805 SYKP43405 635 aa26.36■■□□□ 1.81
VPS53-211ENST00000571805 STK36Q9NRP7 1315 aa26.36■■□□□ 1.81
VPS53-211ENST00000571805 IFIT3O14879 490 aaKnown RBP26.35■■□□□ 1.81
VPS53-211ENST00000571805 AKNAD1Q5T1N1 836 aa26.35■■□□□ 1.81
VPS53-211ENST00000571805 MPHOSPH8Q99549 860 aa26.35■■□□□ 1.81
VPS53-211ENST00000571805 CNNM2Q9H8M5 875 aa26.35■■□□□ 1.81
VPS53-211ENST00000571805 IMPACTQ9P2X3 320 aa26.35■■□□□ 1.81
VPS53-211ENST00000571805 TUBE1Q9UJT0 475 aa26.35■■□□□ 1.81
VPS53-211ENST00000571805 SLC12A7Q9Y666 1083 aa26.35■■□□□ 1.81
VPS53-211ENST00000571805 GSDMDP57764 484 aa26.35■■□□□ 1.81
VPS53-211ENST00000571805 JMYQ8N9B5 988 aa26.35■■□□□ 1.81
VPS53-211ENST00000571805 EIF4ENIF1Q9NRA8 985 aaKnown RBP26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms