RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 BNIP3LO60238 219 aa7.97□□□□□ -1.13
SCFD1-208ENST00000553278 THBS1P07996 1170 aa7.97□□□□□ -1.13
SCFD1-208ENST00000553278 BMP1P13497 986 aa7.97□□□□□ -1.13
SCFD1-208ENST00000553278 CD33P20138 364 aa7.97□□□□□ -1.13
SCFD1-208ENST00000553278 UBAP2LQ14157 1087 aaKnown RBP7.97□□□□□ -1.13
SCFD1-208ENST00000553278 TKFCQ3LXA3 575 aa7.97□□□□□ -1.13
SCFD1-208ENST00000553278 CEP135Q66GS9 1140 aa7.97□□□□□ -1.13
SCFD1-208ENST00000553278 POP1Q99575 1024 aaKnown RBP7.97□□□□□ -1.13
SCFD1-208ENST00000553278 NDFIP2Q9NV92 336 aa7.97□□□□□ -1.13
SCFD1-208ENST00000553278 CHPF2Q9P2E5 772 aa7.97□□□□□ -1.13
SCFD1-208ENST00000553278 PLAAQ9Y263 795 aa7.97□□□□□ -1.13
SCFD1-208ENST00000553278 PTCH2Q9Y6C5 1203 aa7.97□□□□□ -1.13
SCFD1-208ENST00000553278 FAM177BA6PVY3 158 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 MAN1A2O60476 641 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 ASMTLO95671 621 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 VIL1P09327 827 aaKnown RBP7.96□□□□□ -1.14
SCFD1-208ENST00000553278 PDGFRBP09619 1106 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 HCLS1P14317 486 aaPredicted RBP7.96□□□□□ -1.14
SCFD1-208ENST00000553278 PTPRAP18433 802 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 HFE2Q6ZVN8 426 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 FAM178BQ8IXR5 827 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 MICALL1Q8N3F8 863 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 STAG1Q8WVM7 1258 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 GAL3ST3Q96A11 431 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 ABHD17AQ96GS6 310 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 ZFP42Q96MM3 310 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 TM9SF2Q99805 663 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 IGFLR1Q9H665 355 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 ZMYM5Q9UJ78 669 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 SLC12A7Q9Y666 1083 aa7.96□□□□□ -1.14
SCFD1-208ENST00000553278 A0A1W2PQH9 124 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 ZBTB42B2RXF5 422 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 DIAPH1O60610 1272 aaKnown RBP7.95□□□□□ -1.14
SCFD1-208ENST00000553278 EIF5BO60841 1220 aaKnown RBP7.95□□□□□ -1.14
SCFD1-208ENST00000553278 EIF2AK2P19525 551 aaKnown RBP7.95□□□□□ -1.14
SCFD1-208ENST00000553278 MLECQ14165 292 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 ZNF423Q2M1K9 1284 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 C6orf15Q6UXA7 325 aaPredicted RBP7.95□□□□□ -1.14
SCFD1-208ENST00000553278 SPATC1Q76KD6 591 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 KRT26Q7Z3Y9 468 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 TRIM46Q7Z4K8 759 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 TTC6Q86TZ1 520 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 ZSWIM2Q8NEG5 633 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 GRIN3AQ8TCU5 1115 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 CEP89Q96ST8 783 aa7.95□□□□□ -1.14
SCFD1-208ENST00000553278 ATXN7L1Q9ULK2 861 aaPredicted RBP7.95□□□□□ -1.14
SCFD1-208ENST00000553278 B2RBV5 119 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 GRIN3BO60391 1043 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 GUCY2CP25092 1073 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 ZNF252P-AS1Q0IIN9 211 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 FAM182BQ5T319 152 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 RUFY4Q6ZNE9 571 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 EEPD1Q7L9B9 569 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 PRPF38AQ8NAV1 312 aaKnown RBP7.94□□□□□ -1.14
SCFD1-208ENST00000553278 STK35Q8TDR2 534 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 DNAJB12Q9NXW2 375 aaKnown RBP7.94□□□□□ -1.14
SCFD1-208ENST00000553278 PRR12Q9ULL5 1215 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 SOX13Q9UN79 622 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 G3BP2Q9UN86 482 aaKnown RBP7.94□□□□□ -1.14
SCFD1-208ENST00000553278 PHF24Q9UPV7 400 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 POLR3KQ9Y2Y1 108 aaPredicted RBP7.94□□□□□ -1.14
SCFD1-208ENST00000553278 SUGT1Q9Y2Z0 365 aa7.94□□□□□ -1.14
SCFD1-208ENST00000553278 TBC1D8BQ0IIM8 1120 aa7.93□□□□□ -1.14
SCFD1-208ENST00000553278 AP3B2Q13367 1082 aa7.93□□□□□ -1.14
SCFD1-208ENST00000553278 DALRD3Q5D0E6 543 aaKnown RBP7.93□□□□□ -1.14
SCFD1-208ENST00000553278 FERMT3Q86UX7 667 aa7.93□□□□□ -1.14
SCFD1-208ENST00000553278 TRIM22Q8IYM9 498 aa7.93□□□□□ -1.14
SCFD1-208ENST00000553278 ZSCAN1Q8NBB4 408 aa7.93□□□□□ -1.14
SCFD1-208ENST00000553278 GMCL1Q96IK5 515 aa7.93□□□□□ -1.14
SCFD1-208ENST00000553278 UBE2OQ9C0C9 1292 aaKnown RBP7.93□□□□□ -1.14
SCFD1-208ENST00000553278 MEIS3P2A8K0S8 358 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 AVPP01185 164 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 CNGA1P29973 690 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 NCAPHQ15003 741 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 TMEM67Q5HYA8 995 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 ZC3H12BQ5HYM0 836 aaKnown RBP7.92□□□□□ -1.14
SCFD1-208ENST00000553278 HGSNATQ68CP4 663 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 VN1R5Q7Z5H4 357 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 CERS3Q8IU89 383 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 TAB3Q8N5C8 712 aaPredicted RBP7.92□□□□□ -1.14
SCFD1-208ENST00000553278 TMEM40Q8WWA1 233 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 SLC26A8Q96RN1 970 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 HOMER2Q9NSB8 354 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 HCN2Q9UL51 889 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 FAN1Q9Y2M0 1017 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 CD2APQ9Y5K6 639 aa7.92□□□□□ -1.14
SCFD1-208ENST00000553278 FAM187AA6NFU0 413 aa7.91□□□□□ -1.14
SCFD1-208ENST00000553278 ESRRAP11474 423 aaPredicted RBP7.91□□□□□ -1.14
SCFD1-208ENST00000553278 FGFR3P22607 806 aa7.91□□□□□ -1.14
SCFD1-208ENST00000553278 CABP4P57796 275 aa7.91□□□□□ -1.14
SCFD1-208ENST00000553278 PTPN11Q06124 597 aaPredicted RBP7.91□□□□□ -1.14
SCFD1-208ENST00000553278 DBN1Q16643 649 aa7.91□□□□□ -1.14
SCFD1-208ENST00000553278 LONRF2Q1L5Z9 754 aa7.91□□□□□ -1.14
SCFD1-208ENST00000553278 MAP1SQ66K74 1059 aaPredicted RBP7.91□□□□□ -1.14
SCFD1-208ENST00000553278 JDP2Q8WYK2 163 aa7.91□□□□□ -1.14
SCFD1-208ENST00000553278 ADAM19Q9H013 955 aa7.91□□□□□ -1.14
SCFD1-208ENST00000553278 PRR36Q9H6K5 1346 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 SLC35F4A4IF30 521 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 IQCA1LA6NCM1 817 aa7.9□□□□□ -1.14
SCFD1-208ENST00000553278 EIF4EBP3O60516 100 aaPredicted RBP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms