RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 OTUD7AQ8TE49 926 aaPredicted RBP23.3■■□□□ 1.32
DDX55-211ENST00000544429 CDK5RAP2Q96SN8 1893 aa23.3■■□□□ 1.32
DDX55-211ENST00000544429 FOCADQ5VW36 1801 aa23.29■■□□□ 1.32
DDX55-211ENST00000544429 LDHCP07864 332 aa23.29■■□□□ 1.32
DDX55-211ENST00000544429 CACNB3P54284 484 aa23.29■■□□□ 1.32
DDX55-211ENST00000544429 RHBDL3P58872 404 aa23.29■■□□□ 1.32
DDX55-211ENST00000544429 TTF1Q15361 905 aaPredicted RBP23.29■■□□□ 1.32
DDX55-211ENST00000544429 BCL11AQ9H165 835 aa23.29■■□□□ 1.32
DDX55-211ENST00000544429 BOLA2Q9H3K6 86 aa23.29■■□□□ 1.32
DDX55-211ENST00000544429 TTC41PQ6P2S7 1318 aa23.29■■□□□ 1.32
DDX55-211ENST00000544429 RPAP1Q9BWH6 1393 aaPredicted RBP23.28■■□□□ 1.32
DDX55-211ENST00000544429 BTDP43251 543 aa23.28■■□□□ 1.32
DDX55-211ENST00000544429 ADGRA1Q86SQ6 560 aa23.28■■□□□ 1.32
DDX55-211ENST00000544429 PI4K2BQ8TCG2 481 aa23.28■■□□□ 1.32
DDX55-211ENST00000544429 EDC3Q96F86 508 aaKnown RBP23.28■■□□□ 1.32
DDX55-211ENST00000544429 HHIPL1Q96JK4 782 aa23.28■■□□□ 1.32
DDX55-211ENST00000544429 IDI2Q9BXS1 227 aa23.28■■□□□ 1.32
DDX55-211ENST00000544429 ZNF408Q9H9D4 720 aa23.28■■□□□ 1.32
DDX55-211ENST00000544429 GBA2Q9HCG7 927 aaPredicted RBP23.28■■□□□ 1.32
DDX55-211ENST00000544429 TCP10L2B9ZVM9 353 aa23.27■■□□□ 1.32
DDX55-211ENST00000544429 GOLIM4O00461 696 aa23.27■■□□□ 1.32
DDX55-211ENST00000544429 MAP4K4O95819 1239 aaPredicted RBP23.27■■□□□ 1.32
DDX55-211ENST00000544429 PPP4CP60510 307 aa23.27■■□□□ 1.32
DDX55-211ENST00000544429 FKBP1BP68106 108 aa23.27■■□□□ 1.32
DDX55-211ENST00000544429 NUCB1Q02818 461 aa23.27■■□□□ 1.32
DDX55-211ENST00000544429 NAA16Q6N069 864 aaPredicted RBP23.27■■□□□ 1.32
DDX55-211ENST00000544429 GPATCH3Q96I76 525 aa23.27■■□□□ 1.32
DDX55-211ENST00000544429 USP40Q9NVE5 1235 aa23.27■■□□□ 1.32
DDX55-211ENST00000544429 PAG1Q9NWQ8 432 aa23.27■■□□□ 1.32
DDX55-211ENST00000544429 FAM198AQ9UFP1 575 aa23.27■■□□□ 1.32
DDX55-211ENST00000544429 STAP2Q9UGK3 403 aa23.27■■□□□ 1.32
DDX55-211ENST00000544429 PCNTO95613 3336 aa23.26■■□□□ 1.31
DDX55-211ENST00000544429 WDHD1O75717 1129 aaPredicted RBP23.26■■□□□ 1.31
DDX55-211ENST00000544429 IDH1O75874 414 aaKnown RBP23.26■■□□□ 1.31
DDX55-211ENST00000544429 TNNI2P48788 182 aa23.26■■□□□ 1.31
DDX55-211ENST00000544429 NFIAQ12857 509 aa23.26■■□□□ 1.31
DDX55-211ENST00000544429 CDAN1Q8IWY9 1227 aa23.26■■□□□ 1.31
DDX55-211ENST00000544429 DNAJC2Q99543 621 aaKnown RBP23.26■■□□□ 1.31
DDX55-211ENST00000544429 TMEM39BQ9GZU3 492 aa23.26■■□□□ 1.31
DDX55-211ENST00000544429 TMOD2Q9NZR1 351 aa23.26■■□□□ 1.31
DDX55-211ENST00000544429 NPM3O75607 178 aaKnown RBP23.25■■□□□ 1.31
DDX55-211ENST00000544429 MX1P20591 662 aa23.25■■□□□ 1.31
DDX55-211ENST00000544429 MAP3K12Q12852 859 aa23.25■■□□□ 1.31
DDX55-211ENST00000544429 NBPF12Q5TAG4 269 aaPredicted RBP23.25■■□□□ 1.31
DDX55-211ENST00000544429 TSHZ3Q63HK5 1081 aa23.25■■□□□ 1.31
DDX55-211ENST00000544429 KLRG1Q96E93 195 aa23.25■■□□□ 1.31
DDX55-211ENST00000544429 THSD7BQ9C0I4 1608 aa23.24■■□□□ 1.31
DDX55-211ENST00000544429 TCRBV5S4A2TA0A5A2 114 aa23.24■■□□□ 1.31
DDX55-211ENST00000544429 MAP3K11Q16584 847 aa23.24■■□□□ 1.31
DDX55-211ENST00000544429 CHD1LQ86WJ1 897 aa23.24■■□□□ 1.31
DDX55-211ENST00000544429 C2orf69Q8N8R5 385 aa23.24■■□□□ 1.31
DDX55-211ENST00000544429 FAM151AQ8WW52 585 aa23.24■■□□□ 1.31
DDX55-211ENST00000544429 ABT1Q9ULW3 272 aaKnown RBP23.24■■□□□ 1.31
DDX55-211ENST00000544429 SUPT20HL1Q3ZLR7 823 aa23.23■■□□□ 1.31
DDX55-211ENST00000544429 MAGEB6Q8N7X4 407 aa23.23■■□□□ 1.31
DDX55-211ENST00000544429 LNPKQ9C0E8 428 aa23.23■■□□□ 1.31
DDX55-211ENST00000544429 OTOFQ9HC10 1997 aa23.22■■□□□ 1.31
DDX55-211ENST00000544429 ENTPD3O75355 529 aa23.22■■□□□ 1.31
DDX55-211ENST00000544429 GLRX3O76003 335 aaKnown RBP23.22■■□□□ 1.31
DDX55-211ENST00000544429 PDE6AP16499 860 aa23.22■■□□□ 1.31
DDX55-211ENST00000544429 NF2P35240 595 aa23.22■■□□□ 1.31
DDX55-211ENST00000544429 PDE1AP54750 535 aa23.22■■□□□ 1.31
DDX55-211ENST00000544429 DEFB115Q30KQ5 88 aa23.22■■□□□ 1.31
DDX55-211ENST00000544429 DDX4Q9NQI0 724 aaKnown RBP23.22■■□□□ 1.31
DDX55-211ENST00000544429 COL2A1P02458 1487 aaPredicted RBP23.22■■□□□ 1.31
DDX55-211ENST00000544429 ERC2O15083 957 aa23.21■■□□□ 1.31
DDX55-211ENST00000544429 CYP7A1P22680 504 aa23.21■■□□□ 1.31
DDX55-211ENST00000544429 HUNKP57058 714 aa23.21■■□□□ 1.31
DDX55-211ENST00000544429 LDLRAD1Q5T700 205 aa23.21■■□□□ 1.31
DDX55-211ENST00000544429 SLC9C2Q5TAH2 1124 aa23.21■■□□□ 1.31
DDX55-211ENST00000544429 B4GALNT3Q6L9W6 998 aa23.21■■□□□ 1.31
DDX55-211ENST00000544429 MOB2Q70IA6 237 aa23.21■■□□□ 1.31
DDX55-211ENST00000544429 ZFPM1Q8IX07 1006 aa23.21■■□□□ 1.31
DDX55-211ENST00000544429 AATFQ9NY61 560 aaKnown RBP eCLIP23.21■■□□□ 1.31
DDX55-211ENST00000544429 ZBTB47Q9UFB7 747 aaPredicted RBP23.21■■□□□ 1.31
DDX55-211ENST00000544429 MKRN1Q9UHC7 482 aaKnown RBP23.21■■□□□ 1.31
DDX55-211ENST00000544429 ATRNL1Q5VV63 1379 aa23.2■■□□□ 1.3
DDX55-211ENST00000544429 BAG3O95817 575 aa23.2■■□□□ 1.3
DDX55-211ENST00000544429 ADD2P35612 726 aa23.2■■□□□ 1.3
DDX55-211ENST00000544429 RGS3P49796 1198 aa23.2■■□□□ 1.3
DDX55-211ENST00000544429 SH3RF3Q8TEJ3 882 aaPredicted RBP23.2■■□□□ 1.3
DDX55-211ENST00000544429 AK9Q5TCS8 1911 aa23.2■■□□□ 1.3
DDX55-211ENST00000544429 CENPBP07199 599 aaPredicted RBP23.19■■□□□ 1.3
DDX55-211ENST00000544429 PLCG2P16885 1265 aa23.19■■□□□ 1.3
DDX55-211ENST00000544429 SH3BP5LQ7L8J4 393 aa23.19■■□□□ 1.3
DDX55-211ENST00000544429 CERS3Q8IU89 383 aa23.19■■□□□ 1.3
DDX55-211ENST00000544429 JMYQ8N9B5 988 aa23.19■■□□□ 1.3
DDX55-211ENST00000544429 KBTBD3Q8NAB2 608 aa23.19■■□□□ 1.3
DDX55-211ENST00000544429 RIOK1Q9BRS2 568 aaKnown RBP23.19■■□□□ 1.3
DDX55-211ENST00000544429 OSBPL3Q9H4L5 887 aa23.19■■□□□ 1.3
DDX55-211ENST00000544429 ZNF532Q9HCE3 1301 aa23.18■■□□□ 1.3
DDX55-211ENST00000544429 USP2O75604 605 aaPredicted RBP23.18■■□□□ 1.3
DDX55-211ENST00000544429 VEGFBP49765 207 aa23.18■■□□□ 1.3
DDX55-211ENST00000544429 TCP10Q12799 353 aa23.18■■□□□ 1.3
DDX55-211ENST00000544429 FZD1Q9UP38 647 aa23.18■■□□□ 1.3
DDX55-211ENST00000544429 LAMB1P07942 1786 aa23.18■■□□□ 1.3
DDX55-211ENST00000544429 SIPA1L1O43166 1804 aa23.17■■□□□ 1.3
DDX55-211ENST00000544429 DDX60LQ5H9U9 1706 aaKnown RBP23.17■■□□□ 1.3
DDX55-211ENST00000544429 UNCXA6NJT0 531 aa23.17■■□□□ 1.3
DDX55-211ENST00000544429 DYNLL1P63167 89 aaKnown RBP23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms