RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 CCDC158Q5M9N0 1113 aa6.9□□□□□ -1.3
PTPRD-214ENST00000540109 TMEM87AQ8NBN3 555 aa6.9□□□□□ -1.3
PTPRD-214ENST00000540109 ZNF512BQ96KM6 892 aaPredicted RBP6.9□□□□□ -1.3
PTPRD-214ENST00000540109 ANO10Q9NW15 660 aa6.9□□□□□ -1.3
PTPRD-214ENST00000540109 CEP126Q9P2H0 1117 aa6.9□□□□□ -1.3
PTPRD-214ENST00000540109 MAP3K15Q6ZN16 1313 aa6.9□□□□□ -1.3
PTPRD-214ENST00000540109 BCL9O00512 1426 aa6.9□□□□□ -1.3
PTPRD-214ENST00000540109 CWC27Q6UX04 472 aaKnown RBP6.9□□□□□ -1.31
PTPRD-214ENST00000540109 TTC14Q96N46 770 aa6.9□□□□□ -1.31
PTPRD-214ENST00000540109 SUFUQ9UMX1 484 aa6.9□□□□□ -1.31
PTPRD-214ENST00000540109 ZNF609O15014 1411 aa6.9□□□□□ -1.31
PTPRD-214ENST00000540109 HOXA7P31268 230 aaPredicted RBP6.9□□□□□ -1.31
PTPRD-214ENST00000540109 IL6STP40189 918 aaPredicted RBP6.9□□□□□ -1.31
PTPRD-214ENST00000540109 CKAP4Q07065 602 aaKnown RBP6.9□□□□□ -1.31
PTPRD-214ENST00000540109 USPL1Q5W0Q7 1092 aa6.9□□□□□ -1.31
PTPRD-214ENST00000540109 RUFY3Q7L099 469 aa6.9□□□□□ -1.31
PTPRD-214ENST00000540109 PAF1Q8N7H5 531 aa6.9□□□□□ -1.31
PTPRD-214ENST00000540109 PIBF1Q8WXW3 757 aa6.9□□□□□ -1.31
PTPRD-214ENST00000540109 RBM42Q9BTD8 480 aaKnown RBP6.9□□□□□ -1.31
PTPRD-214ENST00000540109 DSCC1Q9BVC3 393 aa6.9□□□□□ -1.31
PTPRD-214ENST00000540109 RRP15Q9Y3B9 282 aaKnown RBP6.9□□□□□ -1.31
PTPRD-214ENST00000540109 RPAP1Q9BWH6 1393 aaPredicted RBP6.9□□□□□ -1.31
PTPRD-214ENST00000540109 ROBO1Q9Y6N7 1651 aa6.9□□□□□ -1.31
PTPRD-214ENST00000540109 KDM4FA0A1W2PPD8 638 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 TTF1Q15361 905 aaPredicted RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 ANKRD36CQ5JPF3 1778 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 MSL1Q68DK7 614 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 BLOC1S2Q6QNY1 142 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 FAM43BQ6ZT52 329 aaPredicted RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 KBTBD3Q8NAB2 608 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 OAS2P29728 719 aaKnown RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 PARP10Q53GL7 1025 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 NAA15Q9BXJ9 866 aaKnown RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 CD2BP2O95400 341 aaKnown RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 NECTIN1Q15223 517 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 DBN1Q16643 649 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 INF2Q27J81 1249 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 KIF4BQ2VIQ3 1234 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 MCMDC2Q4G0Z9 681 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 LMBR1LQ6UX01 489 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 SYT10Q6XYQ8 523 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 APLFQ8IW19 511 aaPredicted RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 JARID2Q92833 1246 aaPredicted RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 CCDC114Q96M63 670 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 DNAI1Q9UI46 699 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 TOGARAM1Q9Y4F4 1720 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 INPP5BP32019 993 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 ZBTB38Q8NAP3 1195 aaPredicted RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 DDX17Q92841 729 aaKnown RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 STRN4Q9NRL3 753 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 RNF216Q9NWF9 866 aaPredicted RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 PRAMEF22A3QJZ6 481 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 NMIQ13287 307 aaPredicted RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 SMC1AQ14683 1233 aaKnown RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 UNC5CLQ8IV45 518 aa6.89□□□□□ -1.31
PTPRD-214ENST00000540109 PYM1Q9BRP8 204 aaKnown RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 PA2G4Q9UQ80 394 aaKnown RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 RBM8AQ9Y5S9 174 aaKnown RBP6.89□□□□□ -1.31
PTPRD-214ENST00000540109 NBPF26B4DH59 902 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 FOXO4P98177 505 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 NBPF14Q5TI25 921 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 CREB3L3Q68CJ9 461 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 NBPF10Q6P3W6 841 aaKnown RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 GIMAP6Q6P9H5 292 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 NBPF15Q8N660 670 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 LLPHQ9BRT6 129 aaKnown RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 UPF3BQ9BZI7 483 aaKnown RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 WDR19Q8NEZ3 1342 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 UQCRFS1P1P0C7P4 283 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 SKILP12757 684 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 MAP2K1Q02750 393 aaPredicted RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 TRIM29Q14134 588 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 NSRP1Q9H0G5 558 aaKnown RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 RTL9Q8NET4 1388 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 BARGINQ6ZT62 677 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 DDX54Q8TDD1 881 aaKnown RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 JAKMIP1Q96N16 626 aaKnown RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 STMN4Q9H169 189 aaPredicted RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 RREB1Q92766 1687 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 LIG3P49916 1009 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 TFCP2Q12800 502 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 IFIT5Q13325 482 aaKnown RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 ATL3Q6DD88 541 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 GOPCQ9HD26 462 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 BTG4Q9NY30 223 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 SLC8A1P32418 973 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 SLC20A2Q08357 652 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 ZBTB17Q13105 803 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 ZKSCAN8Q15776 578 aaPredicted RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 TSHZ3Q63HK5 1081 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 SEPT14Q6ZU15 432 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 GBP7Q8N8V2 638 aaPredicted RBP6.88□□□□□ -1.31
PTPRD-214ENST00000540109 ATRIPQ8WXE1 791 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 VEZTQ9HBM0 779 aa6.88□□□□□ -1.31
PTPRD-214ENST00000540109 LUC7L3O95232 432 aaKnown RBP6.87□□□□□ -1.31
PTPRD-214ENST00000540109 CSF1RP07333 972 aa6.87□□□□□ -1.31
PTPRD-214ENST00000540109 ZSCAN20P17040 1043 aaPredicted RBP6.87□□□□□ -1.31
PTPRD-214ENST00000540109 SYNE3Q6ZMZ3 975 aa6.87□□□□□ -1.31
PTPRD-214ENST00000540109 PPFIBP1Q86W92 1011 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms