RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 RGMBQ6NW40 437 aa13.13□□□□□ -0.31
HMGA2-209ENST00000539662 ERICH6Q7L0X2 663 aa13.13□□□□□ -0.31
HMGA2-209ENST00000539662 DZIP1Q86YF9 867 aaKnown RBP13.13□□□□□ -0.31
HMGA2-209ENST00000539662 EDC3Q96F86 508 aaKnown RBP13.13□□□□□ -0.31
HMGA2-209ENST00000539662 ZNF512BQ96KM6 892 aaPredicted RBP13.13□□□□□ -0.31
HMGA2-209ENST00000539662 USP40Q9NVE5 1235 aa13.13□□□□□ -0.31
HMGA2-209ENST00000539662 RAI14Q9P0K7 980 aa13.13□□□□□ -0.31
HMGA2-209ENST00000539662 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.13□□□□□ -0.31
HMGA2-209ENST00000539662 FAM198AQ9UFP1 575 aa13.13□□□□□ -0.31
HMGA2-209ENST00000539662 MAST2Q6P0Q8 1798 aa13.12□□□□□ -0.31
HMGA2-209ENST00000539662 DOCK2Q92608 1830 aa13.12□□□□□ -0.31
HMGA2-209ENST00000539662 USP2O75604 605 aaPredicted RBP13.12□□□□□ -0.31
HMGA2-209ENST00000539662 HSPA1AP0DMV8 641 aaKnown RBP13.12□□□□□ -0.31
HMGA2-209ENST00000539662 HSPA1BP0DMV9 641 aaKnown RBP13.12□□□□□ -0.31
HMGA2-209ENST00000539662 TCP10Q12799 353 aa13.12□□□□□ -0.31
HMGA2-209ENST00000539662 CLASRPQ8N2M8 674 aaKnown RBP13.12□□□□□ -0.31
HMGA2-209ENST00000539662 ZGPATQ8N5A5 531 aaKnown RBP13.12□□□□□ -0.31
HMGA2-209ENST00000539662 HHIPL1Q96JK4 782 aa13.12□□□□□ -0.31
HMGA2-209ENST00000539662 CLMNQ96JQ2 1002 aa13.12□□□□□ -0.31
HMGA2-209ENST00000539662 DDX4Q9NQI0 724 aaKnown RBP13.12□□□□□ -0.31
HMGA2-209ENST00000539662 ANGEL1Q9UNK9 670 aaKnown RBP13.12□□□□□ -0.31
HMGA2-209ENST00000539662 MROH7-TTC4A0A0A0MT08 1334 aa13.12□□□□□ -0.31
HMGA2-209ENST00000539662 RFX7Q2KHR2 1363 aa13.11□□□□□ -0.31
HMGA2-209ENST00000539662 BTDP43251 543 aa13.11□□□□□ -0.31
HMGA2-209ENST00000539662 ZNF157P51786 506 aaPredicted RBP13.11□□□□□ -0.31
HMGA2-209ENST00000539662 RHBDL3P58872 404 aa13.11□□□□□ -0.31
HMGA2-209ENST00000539662 TSHZ3Q63HK5 1081 aa13.11□□□□□ -0.31
HMGA2-209ENST00000539662 SPTY2D1Q68D10 685 aaPredicted RBP13.11□□□□□ -0.31
HMGA2-209ENST00000539662 RASAL3Q86YV0 1011 aa13.11□□□□□ -0.31
HMGA2-209ENST00000539662 OTUD7AQ8TE49 926 aaPredicted RBP13.11□□□□□ -0.31
HMGA2-209ENST00000539662 FAM163AQ96GL9 167 aaPredicted RBP13.11□□□□□ -0.31
HMGA2-209ENST00000539662 LRRCC1Q9C099 1032 aa13.11□□□□□ -0.31
HMGA2-209ENST00000539662 LRP2BPQ9P2M1 347 aa13.11□□□□□ -0.31
HMGA2-209ENST00000539662 CDK5RAP2Q96SN8 1893 aa13.1□□□□□ -0.31
HMGA2-209ENST00000539662 GPR75-ASB3A0A0A6YYF3 556 aa13.1□□□□□ -0.31
HMGA2-209ENST00000539662 WDHD1O75717 1129 aaPredicted RBP13.1□□□□□ -0.31
HMGA2-209ENST00000539662 CHGBP05060 677 aa13.1□□□□□ -0.31
HMGA2-209ENST00000539662 IFIT2P09913 472 aaKnown RBP13.1□□□□□ -0.31
HMGA2-209ENST00000539662 MKRN3Q13064 507 aaKnown RBP13.1□□□□□ -0.31
HMGA2-209ENST00000539662 SLFNL1Q499Z3 407 aa13.1□□□□□ -0.31
HMGA2-209ENST00000539662 LDLRAD1Q5T700 205 aa13.1□□□□□ -0.31
HMGA2-209ENST00000539662 SH3BP5LQ7L8J4 393 aa13.1□□□□□ -0.31
HMGA2-209ENST00000539662 PPP2R3BQ9Y5P8 575 aa13.1□□□□□ -0.31
HMGA2-209ENST00000539662 FOXN1O15353 648 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 SLC10A3P09131 477 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 ECE1P42892 770 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 RGS3P49796 1198 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 DYNLL1P63167 89 aaKnown RBP13.09□□□□□ -0.31
HMGA2-209ENST00000539662 FKBP1BP68106 108 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 KIF23Q02241 960 aaPredicted RBP13.09□□□□□ -0.31
HMGA2-209ENST00000539662 TNFAIP1Q13829 316 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 MIGA2Q7L4E1 593 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 FAM83AQ86UY5 434 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 DNAJC2Q99543 621 aaKnown RBP13.09□□□□□ -0.31
HMGA2-209ENST00000539662 BOLA2Q9H3K6 86 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 WBP1LQ9NX94 342 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 TSKSQ9UJT2 592 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 AK9Q5TCS8 1911 aa13.09□□□□□ -0.31
HMGA2-209ENST00000539662 IDH1O75874 414 aaKnown RBP13.08□□□□□ -0.32
HMGA2-209ENST00000539662 IGHDP01880 384 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 NF2P35240 595 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 GJA5P36382 358 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 TNNI2P48788 182 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 PICALMQ13492 652 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 MAP3K11Q16584 847 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 SUPT20HL1Q3ZLR7 823 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 FKBP1CQ5VVH2 108 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 NAA16Q6N069 864 aaPredicted RBP13.08□□□□□ -0.32
HMGA2-209ENST00000539662 SH3RF3Q8TEJ3 882 aaPredicted RBP13.08□□□□□ -0.32
HMGA2-209ENST00000539662 FAM151AQ8WW52 585 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 CNKSR2Q8WXI2 1034 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 AATFQ9NY61 560 aaKnown RBP eCLIP13.08□□□□□ -0.32
HMGA2-209ENST00000539662 TMOD2Q9NZR1 351 aa13.08□□□□□ -0.32
HMGA2-209ENST00000539662 DDTLA6NHG4 134 aaPredicted RBP13.07□□□□□ -0.32
HMGA2-209ENST00000539662 GOLIM4O00461 696 aa13.07□□□□□ -0.32
HMGA2-209ENST00000539662 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.07□□□□□ -0.32
HMGA2-209ENST00000539662 ARMC9Q7Z3E5 817 aa13.07□□□□□ -0.32
HMGA2-209ENST00000539662 MAGEB6Q8N7X4 407 aa13.07□□□□□ -0.32
HMGA2-209ENST00000539662 IDI2Q9BXS1 227 aa13.07□□□□□ -0.32
HMGA2-209ENST00000539662 ATRNL1Q5VV63 1379 aa13.07□□□□□ -0.32
HMGA2-209ENST00000539662 PPP1R12BO60237 982 aaPredicted RBP13.06□□□□□ -0.32
HMGA2-209ENST00000539662 ATP5JP18859 108 aa13.06□□□□□ -0.32
HMGA2-209ENST00000539662 CYP7A1P22680 504 aa13.06□□□□□ -0.32
HMGA2-209ENST00000539662 MAP2K2P36507 400 aa13.06□□□□□ -0.32
HMGA2-209ENST00000539662 GSTO1P78417 241 aa13.06□□□□□ -0.32
HMGA2-209ENST00000539662 MIGA1Q8NAN2 632 aa13.06□□□□□ -0.32
HMGA2-209ENST00000539662 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.06□□□□□ -0.32
HMGA2-209ENST00000539662 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.06□□□□□ -0.32
HMGA2-209ENST00000539662 CCDC102AQ96A19 550 aa13.06□□□□□ -0.32
HMGA2-209ENST00000539662 CSRNP1Q96S65 589 aa13.06□□□□□ -0.32
HMGA2-209ENST00000539662 ELP3Q9H9T3 547 aa13.06□□□□□ -0.32
HMGA2-209ENST00000539662 SIPA1L1O43166 1804 aa13.06□□□□□ -0.32
HMGA2-209ENST00000539662 FOCADQ5VW36 1801 aa13.06□□□□□ -0.32
HMGA2-209ENST00000539662 RPAP1Q9BWH6 1393 aaPredicted RBP13.06□□□□□ -0.32
HMGA2-209ENST00000539662 LDHCP07864 332 aa13.05□□□□□ -0.32
HMGA2-209ENST00000539662 NOGQ13253 232 aa13.05□□□□□ -0.32
HMGA2-209ENST00000539662 HDAC1Q13547 482 aaPredicted RBP13.05□□□□□ -0.32
HMGA2-209ENST00000539662 SLF2Q8IX21 1173 aa13.05□□□□□ -0.32
HMGA2-209ENST00000539662 PIAS4Q8N2W9 510 aaPredicted RBP13.05□□□□□ -0.32
HMGA2-209ENST00000539662 ZKSCAN4Q969J2 545 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms