RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MARCKSP29966 332 aaPredicted RBP22.31■■□□□ 1.16
VPS28-213ENST00000530983 VPS37DQ86XT2 251 aa22.31■■□□□ 1.16
VPS28-213ENST00000530983 TEX13AQ9BXU3 409 aaPredicted RBP22.31■■□□□ 1.16
VPS28-213ENST00000530983 SENP2Q9HC62 589 aa22.31■■□□□ 1.16
VPS28-213ENST00000530983 IFNKQ9P0W0 207 aa22.31■■□□□ 1.16
VPS28-213ENST00000530983 ANKRD36CQ5JPF3 1778 aa22.31■■□□□ 1.16
VPS28-213ENST00000530983 CTSWP56202 376 aa22.31■■□□□ 1.16
VPS28-213ENST00000530983 TTF1Q15361 905 aaPredicted RBP22.31■■□□□ 1.16
VPS28-213ENST00000530983 APOA5Q6Q788 366 aa22.31■■□□□ 1.16
VPS28-213ENST00000530983 PIGBQ92521 554 aa22.31■■□□□ 1.16
VPS28-213ENST00000530983 IDH1O75874 414 aaKnown RBP22.3■■□□□ 1.16
VPS28-213ENST00000530983 SMC2O95347 1197 aa22.3■■□□□ 1.16
VPS28-213ENST00000530983 CDC27P30260 824 aa22.3■■□□□ 1.16
VPS28-213ENST00000530983 UBE3CQ15386 1083 aa22.3■■□□□ 1.16
VPS28-213ENST00000530983 CNNM1Q9NRU3 951 aa22.3■■□□□ 1.16
VPS28-213ENST00000530983 ANKRD18BA2A2Z9 1011 aa22.3■■□□□ 1.16
VPS28-213ENST00000530983 KRT40Q6A162 431 aa22.3■■□□□ 1.16
VPS28-213ENST00000530983 ZNF532Q9HCE3 1301 aa22.3■■□□□ 1.16
VPS28-213ENST00000530983 B4E1Z4 1266 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 STARD3NLO95772 234 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 ARMCX5Q6P1M9 558 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 PHKBQ93100 1093 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 HPSEQ9Y251 543 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 ITGB4P16144 1822 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 CDKL5O76039 1030 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 APPP05067 770 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 PTPAQ15257 358 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 TMC6Q7Z403 805 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 TIGD1Q96MW7 591 aa22.29■■□□□ 1.16
VPS28-213ENST00000530983 TCRBV5S4A2TA0A5A2 114 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 PDE8BO95263 885 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 PDE6AP16499 860 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 PHKA1P46020 1223 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 SHC4Q6S5L8 630 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 MICU3Q86XE3 530 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 WWC3Q9ULE0 1092 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 PPP6R2O75170 966 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 SYKP43405 635 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 HSPA2P54652 639 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 NTRK3Q16288 839 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 CCDC102BQ68D86 513 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 IGDCC4Q8TDY8 1250 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 MAP3K14Q99558 947 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 HSD3B7Q9H2F3 369 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 TUBE1Q9UJT0 475 aa22.28■■□□□ 1.16
VPS28-213ENST00000530983 CHD4Q14839 1912 aa22.27■■□□□ 1.16
VPS28-213ENST00000530983 LRP6O75581 1613 aa22.27■■□□□ 1.16
VPS28-213ENST00000530983 ARID4AP29374 1257 aaPredicted RBP22.27■■□□□ 1.16
VPS28-213ENST00000530983 E4F1Q66K89 784 aaPredicted RBP22.27■■□□□ 1.16
VPS28-213ENST00000530983 CCDC150Q8NCX0 1101 aa22.27■■□□□ 1.16
VPS28-213ENST00000530983 IRS4O14654 1257 aaPredicted RBP22.26■■□□□ 1.15
VPS28-213ENST00000530983 IKBKBO14920 756 aa22.26■■□□□ 1.15
VPS28-213ENST00000530983 ISM2Q6H9L7 571 aa22.26■■□□□ 1.15
VPS28-213ENST00000530983 TMEM87BQ96K49 555 aa22.26■■□□□ 1.15
VPS28-213ENST00000530983 FEZ1Q99689 392 aa22.26■■□□□ 1.15
VPS28-213ENST00000530983 SLAIN2Q9P270 581 aa22.26■■□□□ 1.15
VPS28-213ENST00000530983 ZNF215Q9UL58 517 aaPredicted RBP22.26■■□□□ 1.15
VPS28-213ENST00000530983 NUP98P52948 1817 aa22.26■■□□□ 1.15
VPS28-213ENST00000530983 RANBP6O60518 1105 aaKnown RBP22.26■■□□□ 1.15
VPS28-213ENST00000530983 EVA1CP58658 441 aa22.26■■□□□ 1.15
VPS28-213ENST00000530983 TPM4P67936 248 aa22.26■■□□□ 1.15
VPS28-213ENST00000530983 STRBPQ96SI9 672 aaKnown RBP22.26■■□□□ 1.15
VPS28-213ENST00000530983 LY9Q9HBG7 655 aa22.26■■□□□ 1.15
VPS28-213ENST00000530983 FAM217BQ9NTX9 383 aaPredicted RBP22.26■■□□□ 1.15
VPS28-213ENST00000530983 CGNQ9P2M7 1197 aaKnown RBP22.26■■□□□ 1.15
VPS28-213ENST00000530983 FAM237AA0A1B0GTK4 181 aa22.25■■□□□ 1.15
VPS28-213ENST00000530983 ZBTB43O43298 467 aa22.25■■□□□ 1.15
VPS28-213ENST00000530983 LMOD1P29536 600 aaPredicted RBP22.25■■□□□ 1.15
VPS28-213ENST00000530983 TAOK2Q9UL54 1235 aa22.25■■□□□ 1.15
VPS28-213ENST00000530983 ARAP2Q8WZ64 1704 aa22.25■■□□□ 1.15
VPS28-213ENST00000530983 CPLX2Q6PUV4 134 aaKnown RBP22.25■■□□□ 1.15
VPS28-213ENST00000530983 SGMS1Q86VZ5 419 aa22.25■■□□□ 1.15
VPS28-213ENST00000530983 KIF18AQ8NI77 898 aa22.25■■□□□ 1.15
VPS28-213ENST00000530983 MYL10Q9BUA6 226 aa22.25■■□□□ 1.15
VPS28-213ENST00000530983 INCENPQ9NQS7 918 aa22.25■■□□□ 1.15
VPS28-213ENST00000530983 UBN2Q6ZU65 1347 aa22.25■■□□□ 1.15
VPS28-213ENST00000530983 IGSF3O75054 1194 aa22.24■■□□□ 1.15
VPS28-213ENST00000530983 ATP1A3P13637 1013 aa22.24■■□□□ 1.15
VPS28-213ENST00000530983 SFPQP23246 707 aaKnown RBP eCLIP22.24■■□□□ 1.15
VPS28-213ENST00000530983 FANCCQ00597 558 aa22.24■■□□□ 1.15
VPS28-213ENST00000530983 JMYQ8N9B5 988 aa22.24■■□□□ 1.15
VPS28-213ENST00000530983 BCL11BQ9C0K0 894 aaPredicted RBP22.24■■□□□ 1.15
VPS28-213ENST00000530983 TBC1D2BQ9UPU7 963 aa22.24■■□□□ 1.15
VPS28-213ENST00000530983 UBE2Q2LH0YL09 131 aa22.24■■□□□ 1.15
VPS28-213ENST00000530983 IARSP41252 1262 aaKnown RBP22.24■■□□□ 1.15
VPS28-213ENST00000530983 GNL2Q13823 731 aaKnown RBP22.24■■□□□ 1.15
VPS28-213ENST00000530983 RESP18Q5W5W9 173 aa22.24■■□□□ 1.15
VPS28-213ENST00000530983 CLIC6Q96NY7 704 aa22.24■■□□□ 1.15
VPS28-213ENST00000530983 TRMT112Q9UI30 125 aaKnown RBP22.24■■□□□ 1.15
VPS28-213ENST00000530983 LRP5O75197 1615 aa22.24■■□□□ 1.15
VPS28-213ENST00000530983 DOCK2Q92608 1830 aa22.24■■□□□ 1.15
VPS28-213ENST00000530983 PNOCQ13519 176 aa22.23■■□□□ 1.15
VPS28-213ENST00000530983 AIDAQ96BJ3 306 aa22.23■■□□□ 1.15
VPS28-213ENST00000530983 PPP1R13BQ96KQ4 1090 aa22.23■■□□□ 1.15
VPS28-213ENST00000530983 SLC4A9Q96Q91 983 aa22.23■■□□□ 1.15
VPS28-213ENST00000530983 EPB41L4AQ9HCS5 686 aaPredicted RBP22.23■■□□□ 1.15
VPS28-213ENST00000530983 GOLGA8AA7E2F4 631 aa22.23■■□□□ 1.15
VPS28-213ENST00000530983 KIF2AO00139 706 aaPredicted RBP22.23■■□□□ 1.15
VPS28-213ENST00000530983 UQCRFS1P1P0C7P4 283 aa22.23■■□□□ 1.15
VPS28-213ENST00000530983 ALX1Q15699 326 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms