RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 FKBP1AP62942 108 aaKnown RBP25.26■■□□□ 1.63
VPS28-212ENST00000530836 GPRC5DQ9NZD1 345 aa25.26■■□□□ 1.63
VPS28-212ENST00000530836 MYH13Q9UKX3 1938 aa25.25■■□□□ 1.63
VPS28-212ENST00000530836 GNAT2P19087 354 aa25.25■■□□□ 1.63
VPS28-212ENST00000530836 HACL1Q9UJ83 578 aa25.25■■□□□ 1.63
VPS28-212ENST00000530836 MYO3BQ8WXR4 1341 aa25.25■■□□□ 1.63
VPS28-212ENST00000530836 LMOD1P29536 600 aaPredicted RBP25.24■■□□□ 1.63
VPS28-212ENST00000530836 CHAF1AQ13111 956 aaPredicted RBP25.24■■□□□ 1.63
VPS28-212ENST00000530836 ZSWIM6Q9HCJ5 1215 aa25.24■■□□□ 1.63
VPS28-212ENST00000530836 CNOT7Q9UIV1 285 aaKnown RBP25.24■■□□□ 1.63
VPS28-212ENST00000530836 CD2BP2O95400 341 aaKnown RBP25.23■■□□□ 1.63
VPS28-212ENST00000530836 EPS15P42566 896 aa25.23■■□□□ 1.63
VPS28-212ENST00000530836 VPS53Q5VIR6 699 aa25.23■■□□□ 1.63
VPS28-212ENST00000530836 CERS5Q8N5B7 392 aa25.23■■□□□ 1.63
VPS28-212ENST00000530836 WDR90Q96KV7 1748 aa25.23■■□□□ 1.63
VPS28-212ENST00000530836 MYO5AQ9Y4I1 1855 aaKnown RBP25.23■■□□□ 1.63
VPS28-212ENST00000530836 MFSD14BQ5SR56 506 aa25.23■■□□□ 1.63
VPS28-212ENST00000530836 TBC1D22AQ8WUA7 517 aa25.23■■□□□ 1.63
VPS28-212ENST00000530836 JAKMIP1Q96N16 626 aaKnown RBP25.23■■□□□ 1.63
VPS28-212ENST00000530836 STRBPQ96SI9 672 aaKnown RBP25.23■■□□□ 1.63
VPS28-212ENST00000530836 CYP46A1Q9Y6A2 500 aa25.23■■□□□ 1.63
VPS28-212ENST00000530836 RPAP1Q9BWH6 1393 aaPredicted RBP25.22■■□□□ 1.63
VPS28-212ENST00000530836 CASTP20810 708 aaKnown RBP25.22■■□□□ 1.63
VPS28-212ENST00000530836 CYP7A1P22680 504 aa25.22■■□□□ 1.63
VPS28-212ENST00000530836 MICALL2Q8IY33 904 aa25.22■■□□□ 1.63
VPS28-212ENST00000530836 TAF1DQ9H5J8 278 aaPredicted RBP25.22■■□□□ 1.63
VPS28-212ENST00000530836 ZMYM6O95789 1325 aa25.22■■□□□ 1.63
VPS28-212ENST00000530836 H7C1D1 291 aa25.21■■□□□ 1.63
VPS28-212ENST00000530836 NAA16Q6N069 864 aaPredicted RBP25.21■■□□□ 1.63
VPS28-212ENST00000530836 RUFY3Q7L099 469 aa25.21■■□□□ 1.63
VPS28-212ENST00000530836 UPF3BQ9BZI7 483 aaKnown RBP25.21■■□□□ 1.63
VPS28-212ENST00000530836 KIF3CO14782 793 aa25.2■■□□□ 1.62
VPS28-212ENST00000530836 CYP21A2P08686 494 aa25.2■■□□□ 1.62
VPS28-212ENST00000530836 HMGB1P09429 215 aaKnown RBP25.2■■□□□ 1.62
VPS28-212ENST00000530836 USP17L8P0C7I0 530 aa25.2■■□□□ 1.62
VPS28-212ENST00000530836 EPHX2P34913 555 aa25.2■■□□□ 1.62
VPS28-212ENST00000530836 ALX1Q15699 326 aa25.2■■□□□ 1.62
VPS28-212ENST00000530836 IMMTQ16891 758 aaKnown RBP25.2■■□□□ 1.62
VPS28-212ENST00000530836 SHTN1A0MZ66 631 aa25.19■■□□□ 1.62
VPS28-212ENST00000530836 PATL2C9JE40 543 aaKnown RBP25.19■■□□□ 1.62
VPS28-212ENST00000530836 MMP14P50281 582 aa25.19■■□□□ 1.62
VPS28-212ENST00000530836 ZNF280AP59817 542 aaPredicted RBP25.19■■□□□ 1.62
VPS28-212ENST00000530836 ADCK5Q3MIX3 580 aa25.19■■□□□ 1.62
VPS28-212ENST00000530836 NSUN4Q96CB9 384 aaKnown RBP25.19■■□□□ 1.62
VPS28-212ENST00000530836 MBD4O95243 580 aa25.19■■□□□ 1.62
VPS28-212ENST00000530836 FGAP02671 866 aa25.19■■□□□ 1.62
VPS28-212ENST00000530836 HSP90AA1P07900 732 aaKnown RBP25.19■■□□□ 1.62
VPS28-212ENST00000530836 BLOC1S2Q6QNY1 142 aa25.19■■□□□ 1.62
VPS28-212ENST00000530836 KIAA0825Q8IV33 1275 aa25.19■■□□□ 1.62
VPS28-212ENST00000530836 TTC14Q96N46 770 aa25.19■■□□□ 1.62
VPS28-212ENST00000530836 ADARB2Q9NS39 739 aaKnown RBP25.19■■□□□ 1.62
VPS28-212ENST00000530836 FOXP2O15409 715 aa25.18■■□□□ 1.62
VPS28-212ENST00000530836 LDHBP07195 334 aaKnown RBP25.18■■□□□ 1.62
VPS28-212ENST00000530836 GSTO1P78417 241 aa25.18■■□□□ 1.62
VPS28-212ENST00000530836 MECOMQ03112 1051 aa25.18■■□□□ 1.62
VPS28-212ENST00000530836 OGFOD1Q8N543 542 aa25.18■■□□□ 1.62
VPS28-212ENST00000530836 NACAP1Q9BZK3 213 aa25.18■■□□□ 1.62
VPS28-212ENST00000530836 ALDH8A1Q9H2A2 487 aaPredicted RBP25.18■■□□□ 1.62
VPS28-212ENST00000530836 PSME4Q14997 1843 aa25.18■■□□□ 1.62
VPS28-212ENST00000530836 MAGEB6P1A0A0J9YX57 407 aa25.17■■□□□ 1.62
VPS28-212ENST00000530836 PNMA8AQ86V59 439 aaPredicted RBP25.17■■□□□ 1.62
VPS28-212ENST00000530836 NEK1Q96PY6 1258 aa25.17■■□□□ 1.62
VPS28-212ENST00000530836 PDRG1Q9NUG6 133 aa25.17■■□□□ 1.62
VPS28-212ENST00000530836 SUGT1Q9Y2Z0 365 aa25.17■■□□□ 1.62
VPS28-212ENST00000530836 APPP05067 770 aa25.16■■□□□ 1.62
VPS28-212ENST00000530836 ANKRD1Q15327 319 aa25.16■■□□□ 1.62
VPS28-212ENST00000530836 DZIP1Q86YF9 867 aaKnown RBP25.16■■□□□ 1.62
VPS28-212ENST00000530836 MAST2Q6P0Q8 1798 aa25.16■■□□□ 1.62
VPS28-212ENST00000530836 ZNF213O14771 459 aa25.15■■□□□ 1.62
VPS28-212ENST00000530836 PRDX5P30044 214 aa25.15■■□□□ 1.62
VPS28-212ENST00000530836 GRIK5Q16478 980 aa25.15■■□□□ 1.62
VPS28-212ENST00000530836 USP50Q70EL3 339 aaPredicted RBP25.15■■□□□ 1.62
VPS28-212ENST00000530836 SAMD7Q7Z3H4 446 aa25.15■■□□□ 1.62
VPS28-212ENST00000530836 CERS3Q8IU89 383 aa25.15■■□□□ 1.62
VPS28-212ENST00000530836 ARMT1Q9H993 441 aa25.15■■□□□ 1.62
VPS28-212ENST00000530836 HDAC9Q9UKV0 1011 aa25.15■■□□□ 1.62
VPS28-212ENST00000530836 F8W031 263 aaPredicted RBP25.15■■□□□ 1.62
VPS28-212ENST00000530836 RPS6KB1P23443 525 aa25.15■■□□□ 1.62
VPS28-212ENST00000530836 ZNF646O15015 1829 aaPredicted RBP25.14■■□□□ 1.62
VPS28-212ENST00000530836 SCN4AP35499 1836 aa25.14■■□□□ 1.62
VPS28-212ENST00000530836 LDHCP07864 332 aa25.14■■□□□ 1.61
VPS28-212ENST00000530836 LCORLQ8N3X6 602 aa25.14■■□□□ 1.61
VPS28-212ENST00000530836 MYOZ2Q9NPC6 264 aa25.14■■□□□ 1.61
VPS28-212ENST00000530836 TTF2Q9UNY4 1162 aaKnown RBP25.14■■□□□ 1.61
VPS28-212ENST00000530836 EGFRP00533 1210 aa25.13■■□□□ 1.61
VPS28-212ENST00000530836 RBM26Q5T8P6 1007 aaKnown RBP25.13■■□□□ 1.61
VPS28-212ENST00000530836 SLF2Q8IX21 1173 aa25.13■■□□□ 1.61
VPS28-212ENST00000530836 IFNL3Q8IZI9 196 aa25.13■■□□□ 1.61
VPS28-212ENST00000530836 TRPM4Q8TD43 1214 aa25.13■■□□□ 1.61
VPS28-212ENST00000530836 RIOK1Q9BRS2 568 aaKnown RBP25.13■■□□□ 1.61
VPS28-212ENST00000530836 LIMCH1Q9UPQ0 1083 aa25.13■■□□□ 1.61
VPS28-212ENST00000530836 SLC4A4Q9Y6R1 1079 aa25.13■■□□□ 1.61
VPS28-212ENST00000530836 HIRAP54198 1017 aaPredicted RBP25.12■■□□□ 1.61
VPS28-212ENST00000530836 TBC1D10BQ4KMP7 808 aaPredicted RBP25.12■■□□□ 1.61
VPS28-212ENST00000530836 EAPPQ56P03 285 aaPredicted RBP25.12■■□□□ 1.61
VPS28-212ENST00000530836 GIMAP6Q6P9H5 292 aa25.12■■□□□ 1.61
VPS28-212ENST00000530836 ADGRA1Q86SQ6 560 aa25.12■■□□□ 1.61
VPS28-212ENST00000530836 MIGA1Q8NAN2 632 aa25.12■■□□□ 1.61
VPS28-212ENST00000530836 ZNF384Q8TF68 577 aa25.12■■□□□ 1.61
VPS28-212ENST00000530836 TMX3Q96JJ7 454 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms