RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SURF6O75683 361 aaKnown RBP9.14□□□□□ -0.95
CD44-228ENST00000528455 ITGA6P23229 1130 aa9.14□□□□□ -0.95
CD44-228ENST00000528455 HOXA10P31260 410 aaPredicted RBP9.14□□□□□ -0.95
CD44-228ENST00000528455 PTPN12Q05209 780 aaKnown RBP9.14□□□□□ -0.95
CD44-228ENST00000528455 G3BP1Q13283 466 aaKnown RBP eCLIP9.14□□□□□ -0.95
CD44-228ENST00000528455 CRY2Q49AN0 593 aa9.14□□□□□ -0.95
CD44-228ENST00000528455 NRXN2Q9P2S2 1712 aa9.14□□□□□ -0.95
CD44-228ENST00000528455 H0YIN7 160 aa9.13□□□□□ -0.95
CD44-228ENST00000528455 BBOX1O75936 387 aa9.13□□□□□ -0.95
CD44-228ENST00000528455 CIAO1O76071 339 aa9.13□□□□□ -0.95
CD44-228ENST00000528455 CHRNA5P30532 468 aa9.13□□□□□ -0.95
CD44-228ENST00000528455 ALDH1B1P30837 517 aa9.13□□□□□ -0.95
CD44-228ENST00000528455 RPS8P62241 208 aaKnown RBP9.13□□□□□ -0.95
CD44-228ENST00000528455 DDX46Q7L014 1031 aaKnown RBP9.13□□□□□ -0.95
CD44-228ENST00000528455 ERC1Q8IUD2 1116 aa9.13□□□□□ -0.95
CD44-228ENST00000528455 EMID1Q96A84 441 aaPredicted RBP9.13□□□□□ -0.95
CD44-228ENST00000528455 CRAMP1Q96RY5 1269 aa9.13□□□□□ -0.95
CD44-228ENST00000528455 CDC5LQ99459 802 aaKnown RBP9.13□□□□□ -0.95
CD44-228ENST00000528455 GREM2Q9H772 168 aa9.13□□□□□ -0.95
CD44-228ENST00000528455 CHMP3Q9Y3E7 222 aa9.13□□□□□ -0.95
CD44-228ENST00000528455 DDX60Q8IY21 1712 aaKnown RBP9.13□□□□□ -0.95
CD44-228ENST00000528455 KIAA1551Q9HCM1 1747 aa9.13□□□□□ -0.95
CD44-228ENST00000528455 APBB1O00213 710 aa9.12□□□□□ -0.95
CD44-228ENST00000528455 GPR37L1O60883 481 aa9.12□□□□□ -0.95
CD44-228ENST00000528455 IL15P40933 162 aaPredicted RBP9.12□□□□□ -0.95
CD44-228ENST00000528455 NUCB1Q02818 461 aa9.12□□□□□ -0.95
CD44-228ENST00000528455 ANKRD45Q5TZF3 282 aa9.12□□□□□ -0.95
CD44-228ENST00000528455 LDHAL6AQ6ZMR3 332 aa9.12□□□□□ -0.95
CD44-228ENST00000528455 C2CD5Q86YS7 1000 aa9.12□□□□□ -0.95
CD44-228ENST00000528455 UNC93B1Q9H1C4 597 aa9.12□□□□□ -0.95
CD44-228ENST00000528455 RIPOR2Q9Y4F9 1068 aa9.12□□□□□ -0.95
CD44-228ENST00000528455 LAMB2P55268 1798 aa9.12□□□□□ -0.95
CD44-228ENST00000528455 BRCA1P38398 1863 aaKnown RBP9.11□□□□□ -0.95
CD44-228ENST00000528455 EYA2O00167 538 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 SRGNP10124 158 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 NPR1P16066 1061 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 IGHMBP2P38935 993 aaKnown RBP9.11□□□□□ -0.95
CD44-228ENST00000528455 C1QTNF8P60827 252 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 TAF7LQ5H9L4 462 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 TMC4Q7Z404 712 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 TTLL6Q8N841 843 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 KIF1BPQ96EK5 621 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 POM121Q96HA1 1249 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 RBM17Q96I25 401 aaKnown RBP9.11□□□□□ -0.95
CD44-228ENST00000528455 LRRCC1Q9C099 1032 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 GPR108Q9NPR9 543 aa9.11□□□□□ -0.95
CD44-228ENST00000528455 BSDC1Q9NW68 430 aaPredicted RBP9.11□□□□□ -0.95
CD44-228ENST00000528455 ARFGEF1Q9Y6D6 1849 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 SASH1O94885 1247 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 STYK1Q6J9G0 422 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 LIAT1Q6ZQX7 453 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 ATG9AQ7Z3C6 839 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 CHD1LQ86WJ1 897 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 ANKRD18AQ8IVF6 992 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 RHPN1Q8TCX5 695 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 ZNF526Q8TF50 670 aaPredicted RBP9.1□□□□□ -0.95
CD44-228ENST00000528455 RPGRQ92834 1020 aaKnown RBP9.1□□□□□ -0.95
CD44-228ENST00000528455 ZNF622Q969S3 477 aaKnown RBP eCLIP9.1□□□□□ -0.95
CD44-228ENST00000528455 MASTLQ96GX5 879 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 CCDC85AQ96PX6 553 aaPredicted RBP9.1□□□□□ -0.95
CD44-228ENST00000528455 MPHOSPH8Q99549 860 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 SEC31BQ9NQW1 1179 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 CEP126Q9P2H0 1117 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 FKBPLQ9UIM3 349 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 PA2G4Q9UQ80 394 aaKnown RBP9.1□□□□□ -0.95
CD44-228ENST00000528455 EXOC6BQ9Y2D4 811 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 AKAP2Q9Y2D5 859 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 NDUFB9Q9Y6M9 179 aa9.1□□□□□ -0.95
CD44-228ENST00000528455 RPIAP49247 311 aa9.09□□□□□ -0.95
CD44-228ENST00000528455 OS9Q13438 667 aaPredicted RBP9.09□□□□□ -0.95
CD44-228ENST00000528455 GRAPQ13588 217 aa9.09□□□□□ -0.95
CD44-228ENST00000528455 C9orf131Q5VYM1 1079 aa9.09□□□□□ -0.95
CD44-228ENST00000528455 SP8Q8IXZ3 490 aa9.09□□□□□ -0.95
CD44-228ENST00000528455 CLASRPQ8N2M8 674 aaKnown RBP9.09□□□□□ -0.95
CD44-228ENST00000528455 KLHDC4Q8TBB5 520 aa9.09□□□□□ -0.95
CD44-228ENST00000528455 GRAPLQ8TC17 118 aaPredicted RBP9.09□□□□□ -0.95
CD44-228ENST00000528455 ZNF594Q96JF6 807 aaPredicted RBP9.09□□□□□ -0.95
CD44-228ENST00000528455 GDPD2Q9HCC8 539 aa9.09□□□□□ -0.95
CD44-228ENST00000528455 CNNM1Q9NRU3 951 aa9.09□□□□□ -0.95
CD44-228ENST00000528455 ABCC12Q96J65 1359 aa9.09□□□□□ -0.95
CD44-228ENST00000528455 MROH5Q6ZUA9 1318 aa9.08□□□□□ -0.96
CD44-228ENST00000528455 ZBTB24O43167 697 aaPredicted RBP9.08□□□□□ -0.96
CD44-228ENST00000528455 PDE8BO95263 885 aa9.08□□□□□ -0.96
CD44-228ENST00000528455 LRRC24Q50LG9 513 aa9.08□□□□□ -0.96
CD44-228ENST00000528455 ARMC2Q8NEN0 867 aa9.08□□□□□ -0.96
CD44-228ENST00000528455 CELF1Q92879 486 aaKnown RBP9.08□□□□□ -0.96
CD44-228ENST00000528455 CNKSR1Q969H4 720 aa9.08□□□□□ -0.96
CD44-228ENST00000528455 PUS3Q9BZE2 481 aaKnown RBP9.08□□□□□ -0.96
CD44-228ENST00000528455 ANKRD2Q9GZV1 360 aa9.08□□□□□ -0.96
CD44-228ENST00000528455 SIL1Q9H173 461 aa9.08□□□□□ -0.96
CD44-228ENST00000528455 MINPP1Q9UNW1 487 aa9.08□□□□□ -0.96
CD44-228ENST00000528455 ANKRD31Q8N7Z5 1873 aa9.08□□□□□ -0.96
CD44-228ENST00000528455 TAF1P21675 1872 aa9.07□□□□□ -0.96
CD44-228ENST00000528455 SLC19A1P41440 591 aa9.07□□□□□ -0.96
CD44-228ENST00000528455 TFCP2Q12800 502 aa9.07□□□□□ -0.96
CD44-228ENST00000528455 TRIM32Q13049 653 aa9.07□□□□□ -0.96
CD44-228ENST00000528455 CC2D2BQ6DHV5 1058 aa9.07□□□□□ -0.96
CD44-228ENST00000528455 BAP1Q92560 729 aa9.07□□□□□ -0.96
CD44-228ENST00000528455 TMX4Q9H1E5 349 aaPredicted RBP9.07□□□□□ -0.96
CD44-228ENST00000528455 PRM3Q9NNZ6 103 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms