RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 ABCF2Q9UG63 623 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 COG6Q9Y2V7 657 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 GAKO14976 1311 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 USP2O75604 605 aaPredicted RBP25.34■■□□□ 1.65
VPS28-206ENST00000526734 ZBTB48P10074 688 aaPredicted RBP25.34■■□□□ 1.65
VPS28-206ENST00000526734 SPRYD7Q5W111 196 aa25.34■■□□□ 1.65
VPS28-206ENST00000526734 ERICH6Q7L0X2 663 aa25.34■■□□□ 1.65
VPS28-206ENST00000526734 FAM163AQ96GL9 167 aaPredicted RBP25.34■■□□□ 1.65
VPS28-206ENST00000526734 ZBTB40Q9NUA8 1239 aa25.34■■□□□ 1.65
VPS28-206ENST00000526734 CACNB3P54284 484 aa25.33■■□□□ 1.65
VPS28-206ENST00000526734 ZNF512BQ96KM6 892 aaPredicted RBP25.33■■□□□ 1.65
VPS28-206ENST00000526734 GSTO1P78417 241 aa25.32■■□□□ 1.64
VPS28-206ENST00000526734 TTC39AQ5SRH9 613 aa25.32■■□□□ 1.64
VPS28-206ENST00000526734 CDC42EP5Q6NZY7 148 aa25.32■■□□□ 1.64
VPS28-206ENST00000526734 FAM151AQ8WW52 585 aa25.32■■□□□ 1.64
VPS28-206ENST00000526734 RNF186Q9NXI6 227 aa25.32■■□□□ 1.64
VPS28-206ENST00000526734 TM4SF4P48230 202 aa25.31■■□□□ 1.64
VPS28-206ENST00000526734 INHBEP58166 350 aa25.31■■□□□ 1.64
VPS28-206ENST00000526734 DCAF15Q66K64 600 aa25.31■■□□□ 1.64
VPS28-206ENST00000526734 MANSC4A6NHS7 340 aaPredicted RBP25.3■■□□□ 1.64
VPS28-206ENST00000526734 MAP4K4O95819 1239 aaPredicted RBP25.3■■□□□ 1.64
VPS28-206ENST00000526734 LDHCP07864 332 aa25.3■■□□□ 1.64
VPS28-206ENST00000526734 MCAMP43121 646 aa25.3■■□□□ 1.64
VPS28-206ENST00000526734 WNK4Q96J92 1243 aa25.3■■□□□ 1.64
VPS28-206ENST00000526734 DBNDD2Q9BQY9 259 aa25.3■■□□□ 1.64
VPS28-206ENST00000526734 USP40Q9NVE5 1235 aa25.3■■□□□ 1.64
VPS28-206ENST00000526734 TSKSQ9UJT2 592 aa25.3■■□□□ 1.64
VPS28-206ENST00000526734 FZD1Q9UP38 647 aa25.3■■□□□ 1.64
VPS28-206ENST00000526734 MROH7-TTC4A0A0A0MT08 1334 aa25.3■■□□□ 1.64
VPS28-206ENST00000526734 TRPA1O75762 1119 aa25.29■■□□□ 1.64
VPS28-206ENST00000526734 CLMNQ96JQ2 1002 aa25.29■■□□□ 1.64
VPS28-206ENST00000526734 IDI2Q9BXS1 227 aa25.29■■□□□ 1.64
VPS28-206ENST00000526734 MAP3K9P80192 1104 aa25.28■■□□□ 1.64
VPS28-206ENST00000526734 MECOMQ03112 1051 aa25.28■■□□□ 1.64
VPS28-206ENST00000526734 CDAN1Q8IWY9 1227 aa25.28■■□□□ 1.64
VPS28-206ENST00000526734 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.28■■□□□ 1.64
VPS28-206ENST00000526734 EXOC6BQ9Y2D4 811 aa25.28■■□□□ 1.64
VPS28-206ENST00000526734 CSADQ9Y600 493 aa25.28■■□□□ 1.64
VPS28-206ENST00000526734 ENTPD3O75355 529 aa25.27■■□□□ 1.64
VPS28-206ENST00000526734 ALDH1A1P00352 501 aa25.27■■□□□ 1.64
VPS28-206ENST00000526734 PI16Q6UXB8 463 aa25.27■■□□□ 1.64
VPS28-206ENST00000526734 DBNLQ9UJU6 430 aaKnown RBP25.27■■□□□ 1.64
VPS28-206ENST00000526734 AKAP11Q9UKA4 1901 aa25.27■■□□□ 1.64
VPS28-206ENST00000526734 MKRN3Q13064 507 aaKnown RBP25.26■■□□□ 1.63
VPS28-206ENST00000526734 EAF2Q96CJ1 260 aaPredicted RBP25.26■■□□□ 1.63
VPS28-206ENST00000526734 RAI14Q9P0K7 980 aa25.26■■□□□ 1.63
VPS28-206ENST00000526734 LRP2BPQ9P2M1 347 aa25.26■■□□□ 1.63
VPS28-206ENST00000526734 RFX7Q2KHR2 1363 aa25.26■■□□□ 1.63
VPS28-206ENST00000526734 GPR75-ASB3A0A0A6YYF3 556 aa25.25■■□□□ 1.63
VPS28-206ENST00000526734 BTDP43251 543 aa25.25■■□□□ 1.63
VPS28-206ENST00000526734 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.25■■□□□ 1.63
VPS28-206ENST00000526734 NSUN4Q96CB9 384 aaKnown RBP25.25■■□□□ 1.63
VPS28-206ENST00000526734 KIF1BPQ96EK5 621 aa25.25■■□□□ 1.63
VPS28-206ENST00000526734 CFHR5Q9BXR6 569 aa25.25■■□□□ 1.63
VPS28-206ENST00000526734 ZNF341Q9BYN7 854 aa25.25■■□□□ 1.63
VPS28-206ENST00000526734 FAM198AQ9UFP1 575 aa25.25■■□□□ 1.63
VPS28-206ENST00000526734 RAB11FIP3O75154 756 aa25.24■■□□□ 1.63
VPS28-206ENST00000526734 NPM3O75607 178 aaKnown RBP25.24■■□□□ 1.63
VPS28-206ENST00000526734 NFIAQ12857 509 aa25.24■■□□□ 1.63
VPS28-206ENST00000526734 VGLL4Q14135 290 aa25.24■■□□□ 1.63
VPS28-206ENST00000526734 NOM1Q5C9Z4 860 aaKnown RBP25.24■■□□□ 1.63
VPS28-206ENST00000526734 RHPN1Q8TCX5 695 aa25.24■■□□□ 1.63
VPS28-206ENST00000526734 MYH2Q9UKX2 1941 aa25.24■■□□□ 1.63
VPS28-206ENST00000526734 LAMB1P07942 1786 aa25.23■■□□□ 1.63
VPS28-206ENST00000526734 TCP10Q12799 353 aa25.23■■□□□ 1.63
VPS28-206ENST00000526734 TBC1D9Q6ZT07 1266 aa25.23■■□□□ 1.63
VPS28-206ENST00000526734 AACSQ86V21 672 aa25.23■■□□□ 1.63
VPS28-206ENST00000526734 CLASRPQ8N2M8 674 aaKnown RBP25.23■■□□□ 1.63
VPS28-206ENST00000526734 WRNIP1Q96S55 665 aa25.23■■□□□ 1.63
VPS28-206ENST00000526734 CCDC8Q9H0W5 538 aaPredicted RBP25.23■■□□□ 1.63
VPS28-206ENST00000526734 ELP3Q9H9T3 547 aa25.23■■□□□ 1.63
VPS28-206ENST00000526734 OTOFQ9HC10 1997 aa25.23■■□□□ 1.63
VPS28-206ENST00000526734 RGS3P49796 1198 aa25.22■■□□□ 1.63
VPS28-206ENST00000526734 C20orf194Q5TEA3 1177 aa25.22■■□□□ 1.63
VPS28-206ENST00000526734 OTUD7BQ6GQQ9 843 aa25.22■■□□□ 1.63
VPS28-206ENST00000526734 TMED8Q6PL24 325 aaPredicted RBP25.22■■□□□ 1.63
VPS28-206ENST00000526734 SIRT2Q8IXJ6 389 aa25.22■■□□□ 1.63
VPS28-206ENST00000526734 OPTNQ96CV9 577 aa25.22■■□□□ 1.63
VPS28-206ENST00000526734 NOL10Q9BSC4 688 aaKnown RBP25.22■■□□□ 1.63
VPS28-206ENST00000526734 TLR7Q9NYK1 1049 aaKnown RBP25.22■■□□□ 1.63
VPS28-206ENST00000526734 SPDYE5A6NIY4 337 aa25.21■■□□□ 1.63
VPS28-206ENST00000526734 ZNF384Q8TF68 577 aa25.21■■□□□ 1.63
VPS28-206ENST00000526734 SNRKQ9NRH2 765 aa25.21■■□□□ 1.63
VPS28-206ENST00000526734 MAST2Q6P0Q8 1798 aa25.21■■□□□ 1.63
VPS28-206ENST00000526734 WDHD1O75717 1129 aaPredicted RBP25.2■■□□□ 1.62
VPS28-206ENST00000526734 ERO1BQ86YB8 467 aa25.2■■□□□ 1.62
VPS28-206ENST00000526734 IFNL1Q8IU54 200 aa25.2■■□□□ 1.62
VPS28-206ENST00000526734 TESPA1A2RU30 521 aaPredicted RBP25.19■■□□□ 1.62
VPS28-206ENST00000526734 BAG3O95817 575 aa25.19■■□□□ 1.62
VPS28-206ENST00000526734 CYP2E1P05181 493 aaPredicted RBP25.19■■□□□ 1.62
VPS28-206ENST00000526734 PLCG2P16885 1265 aa25.19■■□□□ 1.62
VPS28-206ENST00000526734 GJA5P36382 358 aa25.19■■□□□ 1.62
VPS28-206ENST00000526734 ZAP70P43403 619 aa25.19■■□□□ 1.62
VPS28-206ENST00000526734 RHBDL3P58872 404 aa25.19■■□□□ 1.62
VPS28-206ENST00000526734 NAA16Q6N069 864 aaPredicted RBP25.19■■□□□ 1.62
VPS28-206ENST00000526734 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.19■■□□□ 1.62
VPS28-206ENST00000526734 ZNF112Q9UJU3 913 aa25.19■■□□□ 1.62
VPS28-206ENST00000526734 SNCAIPQ9Y6H5 919 aa25.19■■□□□ 1.62
VPS28-206ENST00000526734 COL2A1P02458 1487 aaPredicted RBP25.19■■□□□ 1.62
VPS28-206ENST00000526734 GTF2A2P52657 109 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms