RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SLCO4C1Q6ZQN7 724 aa10.95□□□□□ -0.66
NUP54-215ENST00000514313 DDX54Q8TDD1 881 aaKnown RBP10.95□□□□□ -0.66
NUP54-215ENST00000514313 SLC7A3Q8WY07 619 aa10.95□□□□□ -0.66
NUP54-215ENST00000514313 JPH1Q9HDC5 661 aaPredicted RBP10.95□□□□□ -0.66
NUP54-215ENST00000514313 ZNRF3Q9ULT6 936 aa10.95□□□□□ -0.66
NUP54-215ENST00000514313 U2SURPO15042 1029 aaKnown RBP10.94□□□□□ -0.66
NUP54-215ENST00000514313 TRIM37O94972 964 aa10.94□□□□□ -0.66
NUP54-215ENST00000514313 HMGB1P09429 215 aaKnown RBP10.94□□□□□ -0.66
NUP54-215ENST00000514313 GIPRP48546 466 aa10.94□□□□□ -0.66
NUP54-215ENST00000514313 RPL6Q02878 288 aaKnown RBP10.94□□□□□ -0.66
NUP54-215ENST00000514313 GSTM4Q03013 218 aa10.94□□□□□ -0.66
NUP54-215ENST00000514313 TNNI3KQ59H18 835 aa10.94□□□□□ -0.66
NUP54-215ENST00000514313 REXO1Q8N1G1 1221 aaKnown RBP10.94□□□□□ -0.66
NUP54-215ENST00000514313 CACTIN-AS1Q8N1I8 211 aa10.94□□□□□ -0.66
NUP54-215ENST00000514313 IL22RA1Q8N6P7 574 aa10.94□□□□□ -0.66
NUP54-215ENST00000514313 SOX17Q9H6I2 414 aaPredicted RBP10.94□□□□□ -0.66
NUP54-215ENST00000514313 NXF1Q9UBU9 619 aaKnown RBP10.94□□□□□ -0.66
NUP54-215ENST00000514313 POLR3KQ9Y2Y1 108 aaPredicted RBP10.94□□□□□ -0.66
NUP54-215ENST00000514313 R3HCC1Q9Y3T6 440 aaKnown RBP10.94□□□□□ -0.66
NUP54-215ENST00000514313 ALBP02768 609 aa10.93□□□□□ -0.66
NUP54-215ENST00000514313 SELPP16109 830 aa10.93□□□□□ -0.66
NUP54-215ENST00000514313 ALAS2P22557 587 aa10.93□□□□□ -0.66
NUP54-215ENST00000514313 BAG6P46379 1132 aa10.93□□□□□ -0.66
NUP54-215ENST00000514313 RASA3Q14644 834 aa10.93□□□□□ -0.66
NUP54-215ENST00000514313 DIEXFQ68CQ4 756 aaKnown RBP10.93□□□□□ -0.66
NUP54-215ENST00000514313 ZNF662Q6ZS27 426 aa10.93□□□□□ -0.66
NUP54-215ENST00000514313 GOLGA6L1Q8N7Z2 621 aa10.93□□□□□ -0.66
NUP54-215ENST00000514313 KCNB2Q92953 911 aa10.93□□□□□ -0.66
NUP54-215ENST00000514313 SRPK1Q96SB4 655 aaKnown RBP10.93□□□□□ -0.66
NUP54-215ENST00000514313 ZC3H12CQ9C0D7 883 aaKnown RBP10.93□□□□□ -0.66
NUP54-215ENST00000514313 SNTG2Q9NY99 539 aa10.93□□□□□ -0.66
NUP54-215ENST00000514313 MRPL42Q9Y6G3 142 aaKnown RBP10.93□□□□□ -0.66
NUP54-215ENST00000514313 CDK8P49336 464 aa10.92□□□□□ -0.66
NUP54-215ENST00000514313 RNFT1Q5M7Z0 435 aa10.92□□□□□ -0.66
NUP54-215ENST00000514313 SCARA3Q6AZY7 606 aa10.92□□□□□ -0.66
NUP54-215ENST00000514313 C20orf204Q6ZNR8 217 aa10.92□□□□□ -0.66
NUP54-215ENST00000514313 CELF2-AS1Q8N7Q2 184 aa10.92□□□□□ -0.66
NUP54-215ENST00000514313 CRBNQ96SW2 442 aa10.92□□□□□ -0.66
NUP54-215ENST00000514313 NRSN2Q9GZP1 204 aa10.92□□□□□ -0.66
NUP54-215ENST00000514313 CACNA2D2Q9NY47 1150 aa10.92□□□□□ -0.66
NUP54-215ENST00000514313 H3BM21 787 aa10.91□□□□□ -0.66
NUP54-215ENST00000514313 LINC01387J3KSC0 135 aa10.91□□□□□ -0.66
NUP54-215ENST00000514313 GRIN3BO60391 1043 aa10.91□□□□□ -0.66
NUP54-215ENST00000514313 ECEL1O95672 775 aa10.91□□□□□ -0.66
NUP54-215ENST00000514313 PIP4K2BP78356 416 aa10.91□□□□□ -0.66
NUP54-215ENST00000514313 C19orf57Q0VDD7 668 aa10.91□□□□□ -0.66
NUP54-215ENST00000514313 LSRQ86X29 649 aaPredicted RBP10.91□□□□□ -0.66
NUP54-215ENST00000514313 GPBAR1Q8TDU6 330 aa10.91□□□□□ -0.66
NUP54-215ENST00000514313 GDF2Q9UK05 429 aaPredicted RBP10.91□□□□□ -0.66
NUP54-215ENST00000514313 PPME1Q9Y570 386 aa10.91□□□□□ -0.66
NUP54-215ENST00000514313 PCDHB14Q9Y5E9 798 aa10.91□□□□□ -0.66
NUP54-215ENST00000514313 ANKRD62A6NC57 917 aa10.9□□□□□ -0.66
NUP54-215ENST00000514313 EPXP11678 715 aa10.9□□□□□ -0.66
NUP54-215ENST00000514313 AFF1P51825 1210 aaKnown RBP10.9□□□□□ -0.66
NUP54-215ENST00000514313 OR6P1Q8NGX9 317 aa10.9□□□□□ -0.66
NUP54-215ENST00000514313 DEPDC7Q96QD5 511 aa10.9□□□□□ -0.66
NUP54-215ENST00000514313 COL25A1Q9BXS0 654 aaPredicted RBP10.9□□□□□ -0.66
NUP54-215ENST00000514313 ACTR10Q9NZ32 417 aa10.9□□□□□ -0.66
NUP54-215ENST00000514313 FAM221BA6H8Z2 402 aa10.89□□□□□ -0.67
NUP54-215ENST00000514313 IMPDH2P12268 514 aa10.89□□□□□ -0.67
NUP54-215ENST00000514313 ACSBG1Q96GR2 724 aa10.89□□□□□ -0.67
NUP54-215ENST00000514313 CARD10Q9BWT7 1032 aa10.89□□□□□ -0.67
NUP54-215ENST00000514313 EHMT1Q9H9B1 1298 aa10.89□□□□□ -0.67
NUP54-215ENST00000514313 CCDC85CA6NKD9 419 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 VSIG8P0DPA2 414 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 ARL4DP49703 201 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 POU4F3Q15319 338 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 EGFLAMQ63HQ2 1017 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 FAM117BQ6P1L5 589 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 C1orf229Q6ZS94 237 aaPredicted RBP10.88□□□□□ -0.67
NUP54-215ENST00000514313 C8orf86Q6ZUL3 223 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 NPAS3Q8IXF0 933 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 RBBP8NLQ8NC74 664 aaPredicted RBP10.88□□□□□ -0.67
NUP54-215ENST00000514313 WNT8BQ93098 351 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 CORO1BQ9BR76 489 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 CCDC86Q9H6F5 360 aaKnown RBP10.88□□□□□ -0.67
NUP54-215ENST00000514313 PCDHA4Q9UN74 947 aa10.88□□□□□ -0.67
NUP54-215ENST00000514313 FSCN2O14926 492 aa10.87□□□□□ -0.67
NUP54-215ENST00000514313 ATE1O95260 518 aa10.87□□□□□ -0.67
NUP54-215ENST00000514313 CYP11A1P05108 521 aa10.87□□□□□ -0.67
NUP54-215ENST00000514313 CTSBP07858 339 aa10.87□□□□□ -0.67
NUP54-215ENST00000514313 TCEAL1Q15170 157 aa10.87□□□□□ -0.67
NUP54-215ENST00000514313 WIPI1Q5MNZ9 446 aaPredicted RBP10.87□□□□□ -0.67
NUP54-215ENST00000514313 MSRB2Q9Y3D2 182 aa10.87□□□□□ -0.67
NUP54-215ENST00000514313 MAOBP27338 520 aa10.86□□□□□ -0.67
NUP54-215ENST00000514313 DDR2Q16832 855 aa10.86□□□□□ -0.67
NUP54-215ENST00000514313 ACDQ96AP0 544 aa10.86□□□□□ -0.67
NUP54-215ENST00000514313 PLPPR2Q96GM1 343 aa10.86□□□□□ -0.67
NUP54-215ENST00000514313 TNKS2Q9H2K2 1166 aa10.86□□□□□ -0.67
NUP54-215ENST00000514313 OSGEPQ9NPF4 335 aa10.86□□□□□ -0.67
NUP54-215ENST00000514313 KRT82Q9NSB4 513 aa10.86□□□□□ -0.67
NUP54-215ENST00000514313 M0R082 166 aa10.85□□□□□ -0.67
NUP54-215ENST00000514313 LILRB5O75023 590 aa10.85□□□□□ -0.67
NUP54-215ENST00000514313 NCLP19338 710 aaKnown RBP10.85□□□□□ -0.67
NUP54-215ENST00000514313 INPP5AQ14642 412 aa10.85□□□□□ -0.67
NUP54-215ENST00000514313 LRFN4Q6PJG9 635 aa10.85□□□□□ -0.67
NUP54-215ENST00000514313 RUFY4Q6ZNE9 571 aa10.85□□□□□ -0.67
NUP54-215ENST00000514313 WFDC8Q8IUA0 241 aa10.85□□□□□ -0.67
NUP54-215ENST00000514313 ZNF417Q8TAU3 575 aa10.85□□□□□ -0.67
NUP54-215ENST00000514313 ZNF587Q96SQ5 575 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms