RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 GRAPQ13588 217 aa8.48□□□□□ -1.05
VPS52-219ENST00000493379 ZKSCAN2Q63HK3 967 aa8.48□□□□□ -1.05
VPS52-219ENST00000493379 UBE3BQ7Z3V4 1068 aa8.48□□□□□ -1.05
VPS52-219ENST00000493379 SP8Q8IXZ3 490 aa8.48□□□□□ -1.05
VPS52-219ENST00000493379 GRAPLQ8TC17 118 aaPredicted RBP8.48□□□□□ -1.05
VPS52-219ENST00000493379 CSRNP1Q96S65 589 aa8.48□□□□□ -1.05
VPS52-219ENST00000493379 PSMD1Q99460 953 aa8.48□□□□□ -1.05
VPS52-219ENST00000493379 RTFDC1Q9BY42 306 aaPredicted RBP8.48□□□□□ -1.05
VPS52-219ENST00000493379 PRO3102Q9H379 93 aa8.48□□□□□ -1.05
VPS52-219ENST00000493379 ZNF277Q9NRM2 450 aaPredicted RBP8.48□□□□□ -1.05
VPS52-219ENST00000493379 SEPT9Q9UHD8 586 aaPredicted RBP8.48□□□□□ -1.05
VPS52-219ENST00000493379 STXBP5LQ9Y2K9 1186 aa8.48□□□□□ -1.05
VPS52-219ENST00000493379 ATP6V0A2Q9Y487 856 aa8.48□□□□□ -1.05
VPS52-219ENST00000493379 LAMA2P24043 3122 aaKnown RBP8.48□□□□□ -1.05
VPS52-219ENST00000493379 TBC1D8O95759 1140 aa8.47□□□□□ -1.05
VPS52-219ENST00000493379 CTSWP56202 376 aa8.47□□□□□ -1.05
VPS52-219ENST00000493379 CCDC152Q4G0S7 254 aa8.47□□□□□ -1.05
VPS52-219ENST00000493379 DMRTA1Q5VZB9 504 aa8.47□□□□□ -1.05
VPS52-219ENST00000493379 DDX46Q7L014 1031 aaKnown RBP8.47□□□□□ -1.05
VPS52-219ENST00000493379 RTKN2Q8IZC4 609 aa8.47□□□□□ -1.05
VPS52-219ENST00000493379 DEFB123Q8N688 67 aa8.47□□□□□ -1.05
VPS52-219ENST00000493379 RPGRQ92834 1020 aaKnown RBP8.47□□□□□ -1.05
VPS52-219ENST00000493379 PODXL2Q9NZ53 605 aa8.47□□□□□ -1.05
VPS52-219ENST00000493379 RCAN3Q9UKA8 241 aa8.47□□□□□ -1.05
VPS52-219ENST00000493379 GJA3Q9Y6H8 435 aa8.47□□□□□ -1.05
VPS52-219ENST00000493379 PRUNE2Q8WUY3 3088 aa8.46□□□□□ -1.05
VPS52-219ENST00000493379 AP1G2O75843 785 aa8.46□□□□□ -1.06
VPS52-219ENST00000493379 FDX1P10109 184 aa8.46□□□□□ -1.06
VPS52-219ENST00000493379 EPHA10Q5JZY3 1008 aa8.46□□□□□ -1.06
VPS52-219ENST00000493379 SLC4A10Q6U841 1118 aa8.46□□□□□ -1.06
VPS52-219ENST00000493379 CELF1Q92879 486 aaKnown RBP8.46□□□□□ -1.06
VPS52-219ENST00000493379 BSDC1Q9NW68 430 aaPredicted RBP8.46□□□□□ -1.06
VPS52-219ENST00000493379 C9orf78Q9NZ63 289 aaPredicted RBP8.46□□□□□ -1.06
VPS52-219ENST00000493379 PCDHGC3Q9UN70 934 aa8.46□□□□□ -1.06
VPS52-219ENST00000493379 HDAC5Q9UQL6 1122 aa8.46□□□□□ -1.06
VPS52-219ENST00000493379 ZBTB7BO15156 539 aaPredicted RBP8.45□□□□□ -1.06
VPS52-219ENST00000493379 PBX2P40425 430 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 SCNN1DP51172 638 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 FKBP4Q02790 459 aaKnown RBP eCLIP8.45□□□□□ -1.06
VPS52-219ENST00000493379 MTX1Q13505 466 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 PDE3AQ14432 1141 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 CCDC93Q567U6 631 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 RGMBQ6NW40 437 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 OLFM4Q6UX06 510 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 ANKRD44Q8N8A2 993 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 JARID2Q92833 1246 aaPredicted RBP8.45□□□□□ -1.06
VPS52-219ENST00000493379 SUCLG2Q96I99 432 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 GDPD2Q9HCC8 539 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 SEC31BQ9NQW1 1179 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 VPS9D1Q9Y2B5 631 aa8.45□□□□□ -1.06
VPS52-219ENST00000493379 DDX60Q8IY21 1712 aaKnown RBP8.44□□□□□ -1.06
VPS52-219ENST00000493379 TMEM265A0A087WTH1 108 aa8.44□□□□□ -1.06
VPS52-219ENST00000493379 PPEF1O14829 653 aaPredicted RBP8.44□□□□□ -1.06
VPS52-219ENST00000493379 GNAI3P08754 354 aa8.44□□□□□ -1.06
VPS52-219ENST00000493379 USP17L8P0C7I0 530 aa8.44□□□□□ -1.06
VPS52-219ENST00000493379 RLBP1P12271 317 aa8.44□□□□□ -1.06
VPS52-219ENST00000493379 LMBR1LQ6UX01 489 aa8.44□□□□□ -1.06
VPS52-219ENST00000493379 DZIP1LQ8IYY4 767 aaKnown RBP8.44□□□□□ -1.06
VPS52-219ENST00000493379 GPC2Q8N158 579 aa8.44□□□□□ -1.06
VPS52-219ENST00000493379 HLA-CQ95604 372 aa8.44□□□□□ -1.06
VPS52-219ENST00000493379 CDC5LQ99459 802 aaKnown RBP8.44□□□□□ -1.06
VPS52-219ENST00000493379 GREM2Q9H772 168 aa8.44□□□□□ -1.06
VPS52-219ENST00000493379 TNNQ9UQP3 1299 aa8.44□□□□□ -1.06
VPS52-219ENST00000493379 COL4A5P29400 1685 aa8.43□□□□□ -1.06
VPS52-219ENST00000493379 FZD9O00144 591 aa8.43□□□□□ -1.06
VPS52-219ENST00000493379 ST18O60284 1047 aa8.43□□□□□ -1.06
VPS52-219ENST00000493379 ITGA6P23229 1130 aa8.43□□□□□ -1.06
VPS52-219ENST00000493379 LMOD1P29536 600 aaPredicted RBP8.43□□□□□ -1.06
VPS52-219ENST00000493379 RFX5P48382 616 aaPredicted RBP8.43□□□□□ -1.06
VPS52-219ENST00000493379 GUCA2AQ02747 115 aa8.43□□□□□ -1.06
VPS52-219ENST00000493379 ANKRD18AQ8IVF6 992 aa8.43□□□□□ -1.06
VPS52-219ENST00000493379 TMEM57Q8N5G2 664 aa8.43□□□□□ -1.06
VPS52-219ENST00000493379 FRAT1Q92837 279 aaPredicted RBP8.43□□□□□ -1.06
VPS52-219ENST00000493379 PLSCR2Q9NRY7 297 aa8.43□□□□□ -1.06
VPS52-219ENST00000493379 MINPP1Q9UNW1 487 aa8.43□□□□□ -1.06
VPS52-219ENST00000493379 PIEZO1Q92508 2521 aa8.43□□□□□ -1.06
VPS52-219ENST00000493379 ANKRD18BA2A2Z9 1011 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 SLC4A3P48751 1232 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 ZNF157P51786 506 aaPredicted RBP8.42□□□□□ -1.06
VPS52-219ENST00000493379 IFIT5Q13325 482 aaKnown RBP8.42□□□□□ -1.06
VPS52-219ENST00000493379 C15orf52Q6ZUT6 534 aaKnown RBP8.42□□□□□ -1.06
VPS52-219ENST00000493379 SAMD7Q7Z3H4 446 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 LAPTM4BQ86VI4 370 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 SLF2Q8IX21 1173 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 ZNF687Q8N1G0 1237 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 SUPT20HQ8NEM7 779 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 MEIS3Q99687 375 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 BICC1Q9H694 974 aaKnown RBP8.42□□□□□ -1.06
VPS52-219ENST00000493379 MTMR10Q9NXD2 777 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 SERPINA10Q9UK55 444 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 RIPOR2Q9Y4F9 1068 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 LAMB2P55268 1798 aa8.42□□□□□ -1.06
VPS52-219ENST00000493379 IRS2Q9Y4H2 1338 aa8.41□□□□□ -1.06
VPS52-219ENST00000493379 BHMG1C9JSJ3 638 aaPredicted RBP8.41□□□□□ -1.06
VPS52-219ENST00000493379 GPR25O00155 361 aa8.41□□□□□ -1.06
VPS52-219ENST00000493379 UBTFL1P0CB47 393 aaPredicted RBP8.41□□□□□ -1.06
VPS52-219ENST00000493379 EMP3P54852 163 aa8.41□□□□□ -1.06
VPS52-219ENST00000493379 PTPN12Q05209 780 aaKnown RBP8.41□□□□□ -1.06
VPS52-219ENST00000493379 KIAA2012Q0VF49 1180 aa8.41□□□□□ -1.06
VPS52-219ENST00000493379 MTMR2Q13614 643 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms