RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-208ENST00000489537 RAB3GAP1Q15042 981 aa7.58□□□□□ -1.2
SF3A3-208ENST00000489537 SF3B3Q15393 1217 aaKnown RBP7.58□□□□□ -1.2
SF3A3-208ENST00000489537 HLFQ16534 295 aa7.58□□□□□ -1.2
SF3A3-208ENST00000489537 SLC10A5Q5PT55 438 aa7.58□□□□□ -1.2
SF3A3-208ENST00000489537 SETDB2Q96T68 719 aa7.58□□□□□ -1.2
SF3A3-208ENST00000489537 DBNDD2Q9BQY9 259 aa7.58□□□□□ -1.2
SF3A3-208ENST00000489537 SRP68Q9UHB9 627 aaKnown RBP7.58□□□□□ -1.2
SF3A3-208ENST00000489537 LIMCH1Q9UPQ0 1083 aa7.58□□□□□ -1.2
SF3A3-208ENST00000489537 RIPOR2Q9Y4F9 1068 aa7.58□□□□□ -1.2
SF3A3-208ENST00000489537 TJP1Q07157 1748 aa7.58□□□□□ -1.2
SF3A3-208ENST00000489537 CARMIL3Q8ND23 1372 aa7.58□□□□□ -1.2
SF3A3-208ENST00000489537 GPTP24298 496 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 DDIT3P35638 169 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 UBE4AQ14139 1066 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 NECTIN1Q15223 517 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 CSPP1Q1MSJ5 1256 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 USPL1Q5W0Q7 1092 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 TSHZ3Q63HK5 1081 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 BLOC1S2Q6QNY1 142 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 ANKRD18AQ8IVF6 992 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 FLAD1Q8NFF5 587 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 XAGE2Q96GT9 111 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 NLRP3Q96P20 1036 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 DNAJC2Q99543 621 aaKnown RBP7.57□□□□□ -1.2
SF3A3-208ENST00000489537 TMUB1Q9BVT8 246 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 ANKRD2Q9GZV1 360 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 RPAP1Q9BWH6 1393 aaPredicted RBP7.57□□□□□ -1.2
SF3A3-208ENST00000489537 MED23Q9ULK4 1368 aa7.57□□□□□ -1.2
SF3A3-208ENST00000489537 C4AP0C0L4 1744 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 TESPA1A2RU30 521 aaPredicted RBP7.56□□□□□ -1.2
SF3A3-208ENST00000489537 NPHP1O15259 732 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 NTSR2O95665 410 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 MMP10P09238 476 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 GYS1P13807 737 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 GNAT2P19087 354 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 ARID4AP29374 1257 aaPredicted RBP7.56□□□□□ -1.2
SF3A3-208ENST00000489537 RFC4P35249 363 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 DDR1Q08345 913 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 MAP3K12Q12852 859 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 NMIQ13287 307 aaPredicted RBP7.56□□□□□ -1.2
SF3A3-208ENST00000489537 UBE3CQ15386 1083 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 CAVIN4Q5BKX8 364 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 ZMYM1Q5SVZ6 1142 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 TRAPPC3LQ5T215 181 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 SUSD4Q5VX71 490 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 RUFY3Q7L099 469 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 TMC4Q7Z404 712 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 NBPF5PQ86XG9 351 aaPredicted RBP7.56□□□□□ -1.2
SF3A3-208ENST00000489537 CERS3Q8IU89 383 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 RGS22Q8NE09 1264 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 KLHDC4Q8TBB5 520 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 PDRG1Q9NUG6 133 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 BSDC1Q9NW68 430 aaPredicted RBP7.56□□□□□ -1.2
SF3A3-208ENST00000489537 RBM8AQ9Y5S9 174 aaKnown RBP7.56□□□□□ -1.2
SF3A3-208ENST00000489537 SNX14Q9Y5W7 946 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 ANKRD36CQ5JPF3 1778 aa7.56□□□□□ -1.2
SF3A3-208ENST00000489537 PDS5AQ29RF7 1337 aaKnown RBP7.55□□□□□ -1.2
SF3A3-208ENST00000489537 UBN2Q6ZU65 1347 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 WDR33Q9C0J8 1336 aaKnown RBP7.55□□□□□ -1.2
SF3A3-208ENST00000489537 RIC1Q4ADV7 1423 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 A0A0G2JLW4 131 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 GOLIM4O00461 696 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 GFRA3O60609 400 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 TAF5LO75529 589 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 MAP4K4O95819 1239 aaPredicted RBP7.55□□□□□ -1.2
SF3A3-208ENST00000489537 CFHP08603 1231 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 CASTP20810 708 aaKnown RBP7.55□□□□□ -1.2
SF3A3-208ENST00000489537 KCNA3P22001 575 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 MCM4P33991 863 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 TIMM10P62072 90 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 IMMTQ16891 758 aaKnown RBP7.55□□□□□ -1.2
SF3A3-208ENST00000489537 LRRC24Q50LG9 513 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 CREB3L3Q68CJ9 461 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 PRPF40BQ6NWY9 871 aaKnown RBP7.55□□□□□ -1.2
SF3A3-208ENST00000489537 APPBP2Q92624 585 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 TMX3Q96JJ7 454 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 GREM2Q9H772 168 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 TLR7Q9NYK1 1049 aaKnown RBP7.55□□□□□ -1.2
SF3A3-208ENST00000489537 CD2APQ9Y5K6 639 aa7.55□□□□□ -1.2
SF3A3-208ENST00000489537 ZMYM6O95789 1325 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 WDR19Q8NEZ3 1342 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 AK9Q5TCS8 1911 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 TULP1O00294 542 aaPredicted RBP7.54□□□□□ -1.2
SF3A3-208ENST00000489537 SLC27A2O14975 620 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 ACTN4O43707 911 aaKnown RBP7.54□□□□□ -1.2
SF3A3-208ENST00000489537 DHX16O60231 1041 aaKnown RBP7.54□□□□□ -1.2
SF3A3-208ENST00000489537 NCLP19338 710 aaKnown RBP7.54□□□□□ -1.2
SF3A3-208ENST00000489537 FKBP4Q02790 459 aaKnown RBP eCLIP7.54□□□□□ -1.2
SF3A3-208ENST00000489537 TRDNQ13061 729 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 BLOC1S3Q6QNY0 202 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 DDX46Q7L014 1031 aaKnown RBP7.54□□□□□ -1.2
SF3A3-208ENST00000489537 FBXL16Q8N461 479 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 ZGPATQ8N5A5 531 aaKnown RBP7.54□□□□□ -1.2
SF3A3-208ENST00000489537 NKX2-3Q8TAU0 364 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 PXYLP1Q8TE99 480 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 JARID2Q92833 1246 aaPredicted RBP7.54□□□□□ -1.2
SF3A3-208ENST00000489537 JAKMIP1Q96N16 626 aaKnown RBP7.54□□□□□ -1.2
SF3A3-208ENST00000489537 NEK1Q96PY6 1258 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 MTA3Q9BTC8 594 aa7.54□□□□□ -1.2
SF3A3-208ENST00000489537 NACAP1Q9BZK3 213 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms