RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 CHST3Q7LGC8 479 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 BRAPQ7Z569 592 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 RAB11FIP4Q86YS3 637 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 SLC35F6Q8N357 371 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 SMARCC2Q8TAQ2 1214 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 FAM212AQ96EL1 285 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 EDC3Q96F86 508 aaKnown RBP7.1□□□□□ -1.27
VPS13D-209ENST00000487188 ANKZF1Q9H8Y5 726 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 CHPF2Q9P2E5 772 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 L1RE1Q9UN81 338 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 NFE2L3Q9Y4A8 694 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 STRCP1A6NGW2 1772 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 SOWAHDA6NJG2 315 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 GOLGA8BA8MQT2 603 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 PES1O00541 588 aaKnown RBP7.1□□□□□ -1.27
VPS13D-209ENST00000487188 NCAPHQ15003 741 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 TSR1Q2NL82 804 aaKnown RBP7.1□□□□□ -1.27
VPS13D-209ENST00000487188 LRCH2Q5VUJ6 765 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 MYSM1Q5VVJ2 828 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 KLHL10Q6JEL2 608 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 CPLX2Q6PUV4 134 aaKnown RBP7.1□□□□□ -1.27
VPS13D-209ENST00000487188 HNRNPH1P31943 449 aaKnown RBP7.1□□□□□ -1.27
VPS13D-209ENST00000487188 ADD1P35611 737 aaKnown RBP7.1□□□□□ -1.27
VPS13D-209ENST00000487188 GNGT1P63211 74 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 TRDNQ13061 729 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 TXNDC2Q86VQ3 553 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 TRMT44Q8IYL2 757 aaKnown RBP7.1□□□□□ -1.27
VPS13D-209ENST00000487188 IGSF22Q8N9C0 903 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 KIFC2Q96AC6 838 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 CABS1Q96KC9 395 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 MRPL44Q9H9J2 332 aaKnown RBP7.1□□□□□ -1.27
VPS13D-209ENST00000487188 NDUFAB1O14561 156 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 IPO7O95373 1038 aaKnown RBP7.09□□□□□ -1.27
VPS13D-209ENST00000487188 CPP00450 1065 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 CMA1P23946 247 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 MTF1Q14872 753 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 RALYLQ86SE5 291 aaKnown RBP7.09□□□□□ -1.27
VPS13D-209ENST00000487188 STK11IPQ8N1F8 1099 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 MSANTD4Q8NCY6 345 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 NOC3LQ8WTT2 800 aaKnown RBP7.09□□□□□ -1.27
VPS13D-209ENST00000487188 EAF2Q96CJ1 260 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-209ENST00000487188 TTF2Q9UNY4 1162 aaKnown RBP7.09□□□□□ -1.27
VPS13D-209ENST00000487188 CARMIL3Q8ND23 1372 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 TMEM131LA2VDJ0 1609 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 ALDH1L1O75891 902 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 MCMDC2Q4G0Z9 681 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 C14orf37Q86TY3 774 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 NUTM2AQ8IVF1 878 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-209ENST00000487188 CAPZA3Q96KX2 299 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 CAPS2Q9BXY5 557 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 TLR7Q9NYK1 1049 aaKnown RBP7.09□□□□□ -1.27
VPS13D-209ENST00000487188 SAMM50Q9Y512 469 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 NEXMIFQ5QGS0 1516 aa7.09□□□□□ -1.27
VPS13D-209ENST00000487188 GOLGA6BA6NDN3 693 aa7.09□□□□□ -1.28
VPS13D-209ENST00000487188 FANCGO15287 622 aa7.09□□□□□ -1.28
VPS13D-209ENST00000487188 CYP21A2P08686 494 aa7.09□□□□□ -1.28
VPS13D-209ENST00000487188 USP5P45974 858 aa7.09□□□□□ -1.28
VPS13D-209ENST00000487188 AIMP1Q12904 312 aaKnown RBP7.09□□□□□ -1.28
VPS13D-209ENST00000487188 NEDD9Q14511 834 aa7.09□□□□□ -1.28
VPS13D-209ENST00000487188 B4GALNT4Q76KP1 1039 aa7.09□□□□□ -1.28
VPS13D-209ENST00000487188 DDX46Q7L014 1031 aaKnown RBP7.09□□□□□ -1.28
VPS13D-209ENST00000487188 CDC5LQ99459 802 aaKnown RBP7.09□□□□□ -1.28
VPS13D-209ENST00000487188 C19orf44Q9H6X5 657 aa7.09□□□□□ -1.28
VPS13D-209ENST00000487188 MAP3K2Q9Y2U5 619 aa7.09□□□□□ -1.28
VPS13D-209ENST00000487188 SATB1Q01826 763 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 CKAP4Q07065 602 aaKnown RBP7.08□□□□□ -1.28
VPS13D-209ENST00000487188 LONRF3Q496Y0 759 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 CEP57Q86XR8 500 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 POLR3EQ9NVU0 708 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 RAB21Q9UL25 225 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 LRRIQ3A6PVS8 624 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-209ENST00000487188 NEBLO76041 1014 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 DDX58O95786 925 aaKnown RBP7.08□□□□□ -1.28
VPS13D-209ENST00000487188 BEND3Q5T5X7 828 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 IQCEQ6IPM2 695 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 DHX37Q8IY37 1157 aaKnown RBP7.08□□□□□ -1.28
VPS13D-209ENST00000487188 NUP88Q99567 741 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-209ENST00000487188 NAA15Q9BXJ9 866 aaKnown RBP7.08□□□□□ -1.28
VPS13D-209ENST00000487188 MYO6Q9UM54 1294 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 GUCA1BQ9UMX6 200 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 NDUFB9Q9Y6M9 179 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 PXDNLA1KZ92 1463 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 KLF18A0A0U1RQI7 1052 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 PPFIA1Q13136 1202 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 TTC19Q6DKK2 380 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-209ENST00000487188 NCAPH2Q6IBW4 605 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 TC2NQ8N9U0 490 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 N4BP2L2Q92802 583 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-209ENST00000487188 VEZTQ9HBM0 779 aa7.08□□□□□ -1.28
VPS13D-209ENST00000487188 GNL3LQ9NVN8 582 aaKnown RBP7.08□□□□□ -1.28
VPS13D-209ENST00000487188 MED23Q9ULK4 1368 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 EXOC5O00471 708 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 OPA1O60313 960 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 ZEB2O60315 1214 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 NEXNQ0ZGT2 675 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 KIAA1328Q86T90 577 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 CNGA4Q8IV77 575 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 ANKRD24Q8TF21 1146 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 RIN2Q8WYP3 895 aaPredicted RBP7.07□□□□□ -1.28
VPS13D-209ENST00000487188 NEUROD6Q96NK8 337 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms