RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CCDC148Q8NFR7 591 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 MYL10Q9BUA6 226 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 DSCC1Q9BVC3 393 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 NAPAP54920 295 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 GGA1Q9UJY5 639 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 CCDC150Q8NCX0 1101 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 MED14O60244 1454 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 TEX11Q8IYF3 940 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 LARGE2Q8N3Y3 721 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 CCDC102AQ96A19 550 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 LLPHQ9BRT6 129 aaKnown RBP12.57□□□□□ -0.4
HDAC6-228ENST00000486227 SAP30BPQ9UHR5 308 aaKnown RBP12.57□□□□□ -0.4
HDAC6-228ENST00000486227 NEXMIFQ5QGS0 1516 aa12.57□□□□□ -0.4
HDAC6-228ENST00000486227 ADORA1P30542 326 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 CRKLP46109 303 aaKnown RBP12.56□□□□□ -0.4
HDAC6-228ENST00000486227 PKP1Q13835 747 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 DPP8Q6V1X1 898 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-228ENST00000486227 AOPEPQ8N6M6 819 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 PIGBQ92521 554 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 AATFQ9NY61 560 aaKnown RBP eCLIP12.56□□□□□ -0.42e-7■■■■■ 44.3
HDAC6-228ENST00000486227 SSH2Q76I76 1423 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 CD2BP2O95400 341 aaKnown RBP12.56□□□□□ -0.4
HDAC6-228ENST00000486227 CDR1P51861 262 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 EIF6P56537 245 aaKnown RBP12.56□□□□□ -0.4
HDAC6-228ENST00000486227 UTP14CQ5TAP6 766 aaKnown RBP12.56□□□□□ -0.4
HDAC6-228ENST00000486227 TRMT1LQ7Z2T5 733 aaKnown RBP12.56□□□□□ -0.4
HDAC6-228ENST00000486227 HEG1Q9ULI3 1381 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 A0A1B0GVL5 298 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 BRD1O95696 1058 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 TUBB4AP04350 444 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 U2AF2P26368 475 aaKnown RBP eCLIP12.56□□□□□ -0.41e-7■■□□□ 14.2
HDAC6-228ENST00000486227 KIAA1328Q86T90 577 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 SUPT20HQ8NEM7 779 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 USP31Q70CQ4 1352 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 CDC37L1Q7L3B6 337 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 DHX58Q96C10 678 aa12.56□□□□□ -0.4
HDAC6-228ENST00000486227 LSG1Q9H089 658 aaKnown RBP12.56□□□□□ -0.4
HDAC6-228ENST00000486227 HSPD1P10809 573 aaKnown RBP12.55□□□□□ -0.4
HDAC6-228ENST00000486227 BCAMP50895 628 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 KCNQ4P56696 695 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 FKBP15Q5T1M5 1219 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 LRRC7Q96NW7 1537 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 GADD45BO75293 160 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-228ENST00000486227 IL6STP40189 918 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-228ENST00000486227 GYG1P46976 350 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 AMPD3Q01432 767 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 TSG101Q99816 390 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 PYM1Q9BRP8 204 aaKnown RBP12.55□□□□□ -0.4
HDAC6-228ENST00000486227 BCL2L12Q9HB09 334 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 CALML3P27482 149 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 ALDH1B1P30837 517 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 PTPN12Q05209 780 aaKnown RBP12.55□□□□□ -0.4
HDAC6-228ENST00000486227 ADCK5Q3MIX3 580 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 LAMC1P11047 1609 aa12.55□□□□□ -0.4
HDAC6-228ENST00000486227 SASH1O94885 1247 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 CASQ1P31415 396 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 KRT2P35908 639 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 MTIF2P46199 727 aaKnown RBP12.54□□□□□ -0.4
HDAC6-228ENST00000486227 DMTNQ08495 405 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 POLA2Q14181 598 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 FAM182BQ5T319 152 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 KRT27Q7Z3Y8 459 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 PHKBQ93100 1093 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 ZSWIM6Q9HCJ5 1215 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 CLTCQ00610 1675 aaKnown RBP12.54□□□□□ -0.4
HDAC6-228ENST00000486227 KIAA0754O94854 1291 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 PDE6AP16499 860 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 PDE6BP35913 854 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 NUP88Q99567 741 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-228ENST00000486227 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.54□□□□□ -0.42e-7■■■■■ 33.6
HDAC6-228ENST00000486227 TPCN1Q9ULQ1 816 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 GOLGA6L9A6NEM1 432 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 PDE8BO95263 885 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 CALRP27797 417 aaKnown RBP12.54□□□□□ -0.4
HDAC6-228ENST00000486227 PHKA1P46020 1223 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 WDR66Q8TBY9 1149 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 SEPT11Q9NVA2 429 aaKnown RBP12.54□□□□□ -0.4
HDAC6-228ENST00000486227 CDC42BPGQ6DT37 1551 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 IGKV5-2P06315 115 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 STAT6P42226 847 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 UBASH3AP57075 661 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 TTC6Q86TZ1 520 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 MAP4K1Q92918 833 aa12.54□□□□□ -0.4
HDAC6-228ENST00000486227 PPP1R12BO60237 982 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-228ENST00000486227 JAKMIP3Q5VZ66 844 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 RRAGBQ5VZM2 374 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 CHAMP1Q96JM3 812 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 FBXO3Q9UK99 471 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 V9GY48 417 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-228ENST00000486227 CCDC181Q5TID7 509 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 CACNA2D4Q7Z3S7 1137 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 C17orf53Q8N3J3 647 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-228ENST00000486227 TRIM37O94972 964 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 FGAP02671 866 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 MCM7P33993 719 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 ENOX2Q16206 610 aaKnown RBP12.53□□□□□ -0.4
HDAC6-228ENST00000486227 GPR162Q16538 588 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 USPL1Q5W0Q7 1092 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 ATL3Q6DD88 541 aa12.53□□□□□ -0.4
HDAC6-228ENST00000486227 LUZP1Q86V48 1076 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms