RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 GGT7Q9UJ14 662 aa5.68□□□□□ -1.5
VPS41-212ENST00000482217 SAMM50Q9Y512 469 aa5.68□□□□□ -1.5
VPS41-212ENST00000482217 LINC01387J3KSC0 135 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 FSCN2O14926 492 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 RAB11FIP3O75154 756 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 FBXO24O75426 580 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 FURINP09958 794 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 ERCC5P28715 1186 aaPredicted RBP5.67□□□□□ -1.5
VPS41-212ENST00000482217 ANAPC15P60006 121 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 RPS26P62854 115 aaKnown RBP5.67□□□□□ -1.5
VPS41-212ENST00000482217 C19orf57Q0VDD7 668 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 DOC2BQ14184 412 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 SETDB1Q15047 1291 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 TMEM130Q8N3G9 435 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 KLHL23Q8NBE8 558 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 TGIF2Q9GZN2 237 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 TPSG1Q9NRR2 321 aa5.67□□□□□ -1.5
VPS41-212ENST00000482217 MAFGO15525 162 aa5.66□□□□□ -1.5
VPS41-212ENST00000482217 CENPBP07199 599 aaPredicted RBP5.66□□□□□ -1.5
VPS41-212ENST00000482217 H2AFB1P0C5Y9 115 aa5.66□□□□□ -1.5
VPS41-212ENST00000482217 H2AFB2P0C5Z0 115 aa5.66□□□□□ -1.5
VPS41-212ENST00000482217 NME2P22392 152 aa5.66□□□□□ -1.5
VPS41-212ENST00000482217 AP3B2Q13367 1082 aa5.66□□□□□ -1.5
VPS41-212ENST00000482217 C9orf131Q5VYM1 1079 aa5.66□□□□□ -1.5
VPS41-212ENST00000482217 SCARA3Q6AZY7 606 aa5.66□□□□□ -1.5
VPS41-212ENST00000482217 RELL1Q8IUW5 271 aa5.66□□□□□ -1.5
VPS41-212ENST00000482217 ZNF654Q8IZM8 581 aa5.66□□□□□ -1.5
VPS41-212ENST00000482217 EMILIN2Q9BXX0 1053 aa5.66□□□□□ -1.5
VPS41-212ENST00000482217 DDX41Q9UJV9 622 aaKnown RBP5.66□□□□□ -1.5
VPS41-212ENST00000482217 CELA3AP09093 270 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 LIG3P49916 1009 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 RAD51AP2Q09MP3 1159 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 FAM50AQ14320 339 aaKnown RBP5.65□□□□□ -1.5
VPS41-212ENST00000482217 LRRC14Q15048 493 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 RSPO4Q2I0M5 234 aaPredicted RBP5.65□□□□□ -1.5
VPS41-212ENST00000482217 HSP90AB4PQ58FF6 505 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 NKAPLQ5M9Q1 402 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 TTBK2Q6IQ55 1244 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 USP48Q86UV5 1035 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 WFDC12Q8WWY7 111 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 SLC7A3Q8WY07 619 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 UBXN4Q92575 508 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 SGSM3Q96HU1 749 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 TMEM74Q96NL1 305 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 MYH16Q9H6N6 1097 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 CYP8B1Q9UNU6 501 aa5.65□□□□□ -1.5
VPS41-212ENST00000482217 PAGE1O75459 146 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 CYP11A1P05108 521 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 BMP6P22004 513 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 ARNTP27540 789 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 CDC25BP30305 580 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 ZNF157P51786 506 aaPredicted RBP5.64□□□□□ -1.51
VPS41-212ENST00000482217 ZC3H6P61129 1189 aaKnown RBP5.64□□□□□ -1.51
VPS41-212ENST00000482217 GSTM4Q03013 218 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 PCNX4Q63HM2 1172 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 TXNDC11Q6PKC3 985 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 AGMOQ6ZNB7 445 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 SULF2Q8IWU5 870 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 PHC3Q8NDX5 983 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 GPATCH3Q96I76 525 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 TRIM56Q9BRZ2 755 aaKnown RBP5.64□□□□□ -1.51
VPS41-212ENST00000482217 SSBP4Q9BWG4 385 aaPredicted RBP5.64□□□□□ -1.51
VPS41-212ENST00000482217 AKTIPQ9H8T0 292 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 KBTBD4Q9NVX7 518 aa5.64□□□□□ -1.51
VPS41-212ENST00000482217 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.64□□□□□ -1.51
VPS41-212ENST00000482217 TM4SF5O14894 197 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 MAP4K4O95819 1239 aaPredicted RBP5.63□□□□□ -1.51
VPS41-212ENST00000482217 NOS3P29474 1203 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 GBP2P32456 591 aaPredicted RBP5.63□□□□□ -1.51
VPS41-212ENST00000482217 CD68P34810 354 aaPredicted RBP5.63□□□□□ -1.51
VPS41-212ENST00000482217 IREB2P48200 963 aaKnown RBP5.63□□□□□ -1.51
VPS41-212ENST00000482217 HNRNPUQ00839 825 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS41-212ENST00000482217 SETQ01105 290 aaPredicted RBP5.63□□□□□ -1.51
VPS41-212ENST00000482217 MAP3K11Q16584 847 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 ZNF394Q53GI3 561 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 NAALADL2Q58DX5 795 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 EVI5LQ96CN4 794 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 KLHDC7BQ96G42 594 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 NRSN2Q9GZP1 204 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 SEMA6BQ9H3T3 888 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 CCSER2Q9H7U1 834 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 COPRSQ9NQ92 184 aa5.63□□□□□ -1.51
VPS41-212ENST00000482217 F8W735 103 aaPredicted RBP5.62□□□□□ -1.51
VPS41-212ENST00000482217 DYRK3O43781 588 aa5.62□□□□□ -1.51
VPS41-212ENST00000482217 RACK1P63244 317 aaKnown RBP5.62□□□□□ -1.51
VPS41-212ENST00000482217 LMNB2Q03252 620 aa5.62□□□□□ -1.51
VPS41-212ENST00000482217 ZNF252P-AS1Q0IIN9 211 aa5.62□□□□□ -1.51
VPS41-212ENST00000482217 FOXD4L6Q3SYB3 417 aaPredicted RBP5.62□□□□□ -1.51
VPS41-212ENST00000482217 HP1BP3Q5SSJ5 553 aaPredicted RBP5.62□□□□□ -1.51
VPS41-212ENST00000482217 HGSNATQ68CP4 663 aa5.62□□□□□ -1.51
VPS41-212ENST00000482217 DIEXFQ68CQ4 756 aaKnown RBP5.62□□□□□ -1.51
VPS41-212ENST00000482217 LLGL2Q6P1M3 1020 aa5.62□□□□□ -1.51
VPS41-212ENST00000482217 FOXD4L3Q6VB84 417 aaPredicted RBP5.62□□□□□ -1.51
VPS41-212ENST00000482217 Q6ZS46 218 aa5.62□□□□□ -1.51
VPS41-212ENST00000482217 DPH6Q7L8W6 267 aa5.62□□□□□ -1.51
VPS41-212ENST00000482217 PDZD3Q86UT5 571 aa5.62□□□□□ -1.51
VPS41-212ENST00000482217 CCDC84Q86UT8 332 aaPredicted RBP5.62□□□□□ -1.51
VPS41-212ENST00000482217 DZIP1LQ8IYY4 767 aaKnown RBP5.62□□□□□ -1.51
VPS41-212ENST00000482217 CNPY4Q8N129 248 aa5.62□□□□□ -1.51
VPS41-212ENST00000482217 GALNT11Q8NCW6 608 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms