RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 NBPF12Q5TAG4 269 aaPredicted RBP17.39■□□□□ 0.37
VAMP4-203ENST00000474047 MECOMQ03112 1051 aa17.38■□□□□ 0.37
VAMP4-203ENST00000474047 ZNF512BQ96KM6 892 aaPredicted RBP17.38■□□□□ 0.37
VAMP4-203ENST00000474047 CRBNQ96SW2 442 aa17.38■□□□□ 0.37
VAMP4-203ENST00000474047 TMEM39BQ9GZU3 492 aa17.38■□□□□ 0.37
VAMP4-203ENST00000474047 CDC42EP5Q6NZY7 148 aa17.38■□□□□ 0.37
VAMP4-203ENST00000474047 NOL10Q9BSC4 688 aaKnown RBP17.38■□□□□ 0.37
VAMP4-203ENST00000474047 IREB2P48200 963 aaKnown RBP17.37■□□□□ 0.37
VAMP4-203ENST00000474047 FKBP1CQ5VVH2 108 aa17.37■□□□□ 0.37
VAMP4-203ENST00000474047 HOOK2Q96ED9 719 aa17.37■□□□□ 0.37
VAMP4-203ENST00000474047 LRRCC1Q9C099 1032 aa17.37■□□□□ 0.37
VAMP4-203ENST00000474047 MYH2Q9UKX2 1941 aa17.37■□□□□ 0.37
VAMP4-203ENST00000474047 ZAP70P43403 619 aa17.36■□□□□ 0.37
VAMP4-203ENST00000474047 TCP10Q12799 353 aa17.36■□□□□ 0.37
VAMP4-203ENST00000474047 FAM83AQ86UY5 434 aa17.36■□□□□ 0.37
VAMP4-203ENST00000474047 FZD1Q9UP38 647 aa17.36■□□□□ 0.37
VAMP4-203ENST00000474047 BTDP43251 543 aa17.35■□□□□ 0.37
VAMP4-203ENST00000474047 SLC10A4Q96EP9 437 aa17.35■□□□□ 0.37
VAMP4-203ENST00000474047 FAM163AQ96GL9 167 aaPredicted RBP17.35■□□□□ 0.37
VAMP4-203ENST00000474047 WBP1LQ9NX94 342 aa17.35■□□□□ 0.37
VAMP4-203ENST00000474047 MROH7-TTC4A0A0A0MT08 1334 aa17.35■□□□□ 0.37
VAMP4-203ENST00000474047 FAM155AB1AL88 458 aaPredicted RBP17.35■□□□□ 0.37
VAMP4-203ENST00000474047 CYP2E1P05181 493 aaPredicted RBP17.35■□□□□ 0.37
VAMP4-203ENST00000474047 SLC10A3P09131 477 aa17.35■□□□□ 0.37
VAMP4-203ENST00000474047 NAA16Q6N069 864 aaPredicted RBP17.35■□□□□ 0.37
VAMP4-203ENST00000474047 NSUN4Q96CB9 384 aaKnown RBP17.35■□□□□ 0.37
VAMP4-203ENST00000474047 GAKO14976 1311 aa17.35■□□□□ 0.37
VAMP4-203ENST00000474047 KIF23Q02241 960 aaPredicted RBP17.34■□□□□ 0.37
VAMP4-203ENST00000474047 RASAL3Q86YV0 1011 aa17.34■□□□□ 0.37
VAMP4-203ENST00000474047 FAM151AQ8WW52 585 aa17.34■□□□□ 0.37
VAMP4-203ENST00000474047 TEPSINQ96N21 525 aa17.34■□□□□ 0.37
VAMP4-203ENST00000474047 AK9Q5TCS8 1911 aa17.34■□□□□ 0.37
VAMP4-203ENST00000474047 USP2O75604 605 aaPredicted RBP17.33■□□□□ 0.37
VAMP4-203ENST00000474047 IDH1O75874 414 aaKnown RBP17.33■□□□□ 0.37
VAMP4-203ENST00000474047 PCDHB15Q9Y5E8 787 aa17.33■□□□□ 0.37
VAMP4-203ENST00000474047 GPR75-ASB3A0A0A6YYF3 556 aa17.33■□□□□ 0.36
VAMP4-203ENST00000474047 FOXN1O15353 648 aa17.33■□□□□ 0.36
VAMP4-203ENST00000474047 BAG3O95817 575 aa17.33■□□□□ 0.36
VAMP4-203ENST00000474047 CTCFP49711 727 aaPredicted RBP17.33■□□□□ 0.36
VAMP4-203ENST00000474047 MKRN3Q13064 507 aaKnown RBP17.33■□□□□ 0.36
VAMP4-203ENST00000474047 MAP3K11Q16584 847 aa17.33■□□□□ 0.36
VAMP4-203ENST00000474047 LDLRAD1Q5T700 205 aa17.33■□□□□ 0.36
VAMP4-203ENST00000474047 DCAF15Q66K64 600 aa17.33■□□□□ 0.36
VAMP4-203ENST00000474047 ZSCAN29Q8IWY8 852 aaPredicted RBP17.33■□□□□ 0.36
VAMP4-203ENST00000474047 CDAN1Q8IWY9 1227 aa17.33■□□□□ 0.36
VAMP4-203ENST00000474047 DCTPP1Q9H773 170 aa17.33■□□□□ 0.36
VAMP4-203ENST00000474047 ZBTB47Q9UFB7 747 aaPredicted RBP17.33■□□□□ 0.36
VAMP4-203ENST00000474047 SUPT16HQ9Y5B9 1047 aaKnown RBP17.33■□□□□ 0.36
VAMP4-203ENST00000474047 SMARCA5O60264 1052 aaPredicted RBP17.32■□□□□ 0.36
VAMP4-203ENST00000474047 NFIAQ12857 509 aa17.32■□□□□ 0.36
VAMP4-203ENST00000474047 ANKRD13AQ8IZ07 590 aa17.32■□□□□ 0.36
VAMP4-203ENST00000474047 ZIC5Q96T25 663 aa17.32■□□□□ 0.36
VAMP4-203ENST00000474047 PIH1D3Q9NQM4 214 aaKnown RBP17.32■□□□□ 0.36
VAMP4-203ENST00000474047 NDUFB9Q9Y6M9 179 aa17.32■□□□□ 0.36
VAMP4-203ENST00000474047 AKAP11Q9UKA4 1901 aa17.31■□□□□ 0.36
VAMP4-203ENST00000474047 UNCXA6NJT0 531 aa17.31■□□□□ 0.36
VAMP4-203ENST00000474047 IGSF3O75054 1194 aa17.31■□□□□ 0.36
VAMP4-203ENST00000474047 RGS3P49796 1198 aa17.31■□□□□ 0.36
VAMP4-203ENST00000474047 MAP3K12Q12852 859 aa17.31■□□□□ 0.36
VAMP4-203ENST00000474047 PICALMQ13492 652 aa17.31■□□□□ 0.36
VAMP4-203ENST00000474047 TTF1Q15361 905 aaPredicted RBP17.31■□□□□ 0.36
VAMP4-203ENST00000474047 REM2Q8IYK8 340 aaPredicted RBP17.31■□□□□ 0.36
VAMP4-203ENST00000474047 DNAJC2Q99543 621 aaKnown RBP17.31■□□□□ 0.36
VAMP4-203ENST00000474047 SSC5DA1L4H1 1573 aa17.31■□□□□ 0.36
VAMP4-203ENST00000474047 ENTPD3O75355 529 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 AAMPQ13685 434 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 ZNF384Q8TF68 577 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 CLMNQ96JQ2 1002 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 IDI2Q9BXS1 227 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 FAM198AQ9UFP1 575 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 CSADQ9Y600 493 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 CA12O43570 354 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 MAP4K4O95819 1239 aaPredicted RBP17.3■□□□□ 0.36
VAMP4-203ENST00000474047 PLCG2P16885 1265 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 CYP7A1P22680 504 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 MAP3K9P80192 1104 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 MIGA2Q7L4E1 593 aa17.3■□□□□ 0.36
VAMP4-203ENST00000474047 TEX11Q8IYF3 940 aa17.29■□□□□ 0.36
VAMP4-203ENST00000474047 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.29■□□□□ 0.36
VAMP4-203ENST00000474047 GPATCH3Q96I76 525 aa17.29■□□□□ 0.36
VAMP4-203ENST00000474047 ZNF341Q9BYN7 854 aa17.29■□□□□ 0.36
VAMP4-203ENST00000474047 BOLA2Q9H3K6 86 aa17.29■□□□□ 0.36
VAMP4-203ENST00000474047 ANTXR1Q9H6X2 564 aa17.29■□□□□ 0.36
VAMP4-203ENST00000474047 AATFQ9NY61 560 aaKnown RBP eCLIP17.29■□□□□ 0.36
VAMP4-203ENST00000474047 THSD7BQ9C0I4 1608 aa17.29■□□□□ 0.36
VAMP4-203ENST00000474047 RPAP1Q9BWH6 1393 aaPredicted RBP17.29■□□□□ 0.36
VAMP4-203ENST00000474047 GOLIM4O00461 696 aa17.28■□□□□ 0.36
VAMP4-203ENST00000474047 SPRYD7Q5W111 196 aa17.28■□□□□ 0.36
VAMP4-203ENST00000474047 MAGEB6Q8N7X4 407 aa17.28■□□□□ 0.36
VAMP4-203ENST00000474047 WRNIP1Q96S55 665 aa17.28■□□□□ 0.36
VAMP4-203ENST00000474047 CSRNP1Q96S65 589 aa17.28■□□□□ 0.36
VAMP4-203ENST00000474047 ELP3Q9H9T3 547 aa17.28■□□□□ 0.36
VAMP4-203ENST00000474047 WDHD1O75717 1129 aaPredicted RBP17.27■□□□□ 0.36
VAMP4-203ENST00000474047 SLC34A2O95436 690 aa17.27■□□□□ 0.36
VAMP4-203ENST00000474047 ATP5JP18859 108 aa17.27■□□□□ 0.36
VAMP4-203ENST00000474047 LBX1P52954 281 aa17.27■□□□□ 0.36
VAMP4-203ENST00000474047 RHBDL3P58872 404 aa17.27■□□□□ 0.36
VAMP4-203ENST00000474047 SREBF2Q12772 1141 aa17.27■□□□□ 0.36
VAMP4-203ENST00000474047 ZFPM1Q8IX07 1006 aa17.27■□□□□ 0.36
VAMP4-203ENST00000474047 SH3RF3Q8TEJ3 882 aaPredicted RBP17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms