RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 CLASRPQ8N2M8 674 aaKnown RBP23.2■■□□□ 1.3
PTCD3-210ENST00000473829 BCL11AQ9H165 835 aa23.2■■□□□ 1.3
PTCD3-210ENST00000473829 NDUFB9Q9Y6M9 179 aa23.2■■□□□ 1.3
PTCD3-210ENST00000473829 MROH7-TTC4A0A0A0MT08 1334 aa23.19■■□□□ 1.3
PTCD3-210ENST00000473829 NSUN4Q96CB9 384 aaKnown RBP23.19■■□□□ 1.3
PTCD3-210ENST00000473829 ZIC5Q96T25 663 aa23.19■■□□□ 1.3
PTCD3-210ENST00000473829 SMARCA5O60264 1052 aaPredicted RBP23.18■■□□□ 1.3
PTCD3-210ENST00000473829 ZNF157P51786 506 aaPredicted RBP23.18■■□□□ 1.3
PTCD3-210ENST00000473829 NFIAQ12857 509 aa23.18■■□□□ 1.3
PTCD3-210ENST00000473829 PIH1D3Q9NQM4 214 aaKnown RBP23.18■■□□□ 1.3
PTCD3-210ENST00000473829 TMOD2Q9NZR1 351 aa23.18■■□□□ 1.3
PTCD3-210ENST00000473829 RFX7Q2KHR2 1363 aa23.17■■□□□ 1.3
PTCD3-210ENST00000473829 SLC10A3P09131 477 aa23.17■■□□□ 1.3
PTCD3-210ENST00000473829 TNNI2P48788 182 aa23.17■■□□□ 1.3
PTCD3-210ENST00000473829 FKBP1CQ5VVH2 108 aa23.17■■□□□ 1.3
PTCD3-210ENST00000473829 RASAL3Q86YV0 1011 aa23.17■■□□□ 1.3
PTCD3-210ENST00000473829 FAM163AQ96GL9 167 aaPredicted RBP23.17■■□□□ 1.3
PTCD3-210ENST00000473829 DCTPP1Q9H773 170 aa23.17■■□□□ 1.3
PTCD3-210ENST00000473829 USP40Q9NVE5 1235 aa23.17■■□□□ 1.3
PTCD3-210ENST00000473829 RAI14Q9P0K7 980 aa23.17■■□□□ 1.3
PTCD3-210ENST00000473829 LRP2BPQ9P2M1 347 aa23.17■■□□□ 1.3
PTCD3-210ENST00000473829 ANGEL1Q9UNK9 670 aaKnown RBP23.17■■□□□ 1.3
PTCD3-210ENST00000473829 IFIT2P09913 472 aaKnown RBP23.16■■□□□ 1.3
PTCD3-210ENST00000473829 BTDP43251 543 aa23.16■■□□□ 1.3
PTCD3-210ENST00000473829 SUPT20HL1Q3ZLR7 823 aa23.16■■□□□ 1.3
PTCD3-210ENST00000473829 ARMC9Q7Z3E5 817 aa23.16■■□□□ 1.3
PTCD3-210ENST00000473829 FAM83AQ86UY5 434 aa23.16■■□□□ 1.3
PTCD3-210ENST00000473829 LRRCC1Q9C099 1032 aa23.16■■□□□ 1.3
PTCD3-210ENST00000473829 SUPT16HQ9Y5B9 1047 aaKnown RBP23.16■■□□□ 1.3
PTCD3-210ENST00000473829 MAP3K11Q16584 847 aa23.15■■□□□ 1.3
PTCD3-210ENST00000473829 LDLRAD1Q5T700 205 aa23.15■■□□□ 1.3
PTCD3-210ENST00000473829 SLF2Q8IX21 1173 aa23.15■■□□□ 1.3
PTCD3-210ENST00000473829 ANTXR1Q9H6X2 564 aa23.15■■□□□ 1.3
PTCD3-210ENST00000473829 WBP1LQ9NX94 342 aa23.15■■□□□ 1.3
PTCD3-210ENST00000473829 FAM198AQ9UFP1 575 aa23.15■■□□□ 1.3
PTCD3-210ENST00000473829 RPAP1Q9BWH6 1393 aaPredicted RBP23.14■■□□□ 1.3
PTCD3-210ENST00000473829 GPR75-ASB3A0A0A6YYF3 556 aa23.14■■□□□ 1.29
PTCD3-210ENST00000473829 MAP2K2P36507 400 aa23.14■■□□□ 1.29
PTCD3-210ENST00000473829 TCP10Q12799 353 aa23.14■■□□□ 1.29
PTCD3-210ENST00000473829 NOGQ13253 232 aa23.14■■□□□ 1.29
PTCD3-210ENST00000473829 CCDC102AQ96A19 550 aa23.14■■□□□ 1.29
PTCD3-210ENST00000473829 PPP1R12BO60237 982 aaPredicted RBP23.13■■□□□ 1.29
PTCD3-210ENST00000473829 USP2O75604 605 aaPredicted RBP23.13■■□□□ 1.29
PTCD3-210ENST00000473829 RHBDL3P58872 404 aa23.13■■□□□ 1.29
PTCD3-210ENST00000473829 CDK5RAP2Q96SN8 1893 aa23.13■■□□□ 1.29
PTCD3-210ENST00000473829 WDHD1O75717 1129 aaPredicted RBP23.12■■□□□ 1.29
PTCD3-210ENST00000473829 GSTO1P78417 241 aa23.12■■□□□ 1.29
PTCD3-210ENST00000473829 ADGRA1Q86SQ6 560 aa23.12■■□□□ 1.29
PTCD3-210ENST00000473829 ZFPM1Q8IX07 1006 aa23.12■■□□□ 1.29
PTCD3-210ENST00000473829 FAM151AQ8WW52 585 aa23.12■■□□□ 1.29
PTCD3-210ENST00000473829 CLMNQ96JQ2 1002 aa23.12■■□□□ 1.29
PTCD3-210ENST00000473829 DDX4Q9NQI0 724 aaKnown RBP23.12■■□□□ 1.29
PTCD3-210ENST00000473829 AK9Q5TCS8 1911 aa23.12■■□□□ 1.29
PTCD3-210ENST00000473829 FOXN1O15353 648 aa23.11■■□□□ 1.29
PTCD3-210ENST00000473829 MAP2K1Q02750 393 aaPredicted RBP23.11■■□□□ 1.29
PTCD3-210ENST00000473829 NAA16Q6N069 864 aaPredicted RBP23.11■■□□□ 1.29
PTCD3-210ENST00000473829 EXOC6Q8TAG9 804 aa23.11■■□□□ 1.29
PTCD3-210ENST00000473829 IDI2Q9BXS1 227 aa23.11■■□□□ 1.29
PTCD3-210ENST00000473829 LDHCP07864 332 aa23.1■■□□□ 1.29
PTCD3-210ENST00000473829 RGS3P49796 1198 aa23.1■■□□□ 1.29
PTCD3-210ENST00000473829 KIF23Q02241 960 aaPredicted RBP23.1■■□□□ 1.29
PTCD3-210ENST00000473829 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.1■■□□□ 1.29
PTCD3-210ENST00000473829 LAMB1P07942 1786 aa23.09■■□□□ 1.29
PTCD3-210ENST00000473829 IDH1O75874 414 aaKnown RBP23.09■■□□□ 1.29
PTCD3-210ENST00000473829 IREB2P48200 963 aaKnown RBP23.09■■□□□ 1.29
PTCD3-210ENST00000473829 EDC3Q96F86 508 aaKnown RBP23.09■■□□□ 1.29
PTCD3-210ENST00000473829 DNAJC2Q99543 621 aaKnown RBP23.09■■□□□ 1.29
PTCD3-210ENST00000473829 FOCADQ5VW36 1801 aa23.09■■□□□ 1.29
PTCD3-210ENST00000473829 MKRN3Q13064 507 aaKnown RBP23.08■■□□□ 1.29
PTCD3-210ENST00000473829 SH3BP5LQ7L8J4 393 aa23.08■■□□□ 1.29
PTCD3-210ENST00000473829 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.08■■□□□ 1.29
PTCD3-210ENST00000473829 ATRNL1Q5VV63 1379 aa23.07■■□□□ 1.28
PTCD3-210ENST00000473829 ENTPD3O75355 529 aa23.07■■□□□ 1.28
PTCD3-210ENST00000473829 ATP5JP18859 108 aa23.07■■□□□ 1.28
PTCD3-210ENST00000473829 PICALMQ13492 652 aa23.07■■□□□ 1.28
PTCD3-210ENST00000473829 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.07■■□□□ 1.28
PTCD3-210ENST00000473829 SH3RF3Q8TEJ3 882 aaPredicted RBP23.07■■□□□ 1.28
PTCD3-210ENST00000473829 BOLA2Q9H3K6 86 aa23.07■■□□□ 1.28
PTCD3-210ENST00000473829 AATFQ9NY61 560 aaKnown RBP eCLIP23.07■■□□□ 1.28
PTCD3-210ENST00000473829 GOLIM4O00461 696 aa23.06■■□□□ 1.28
PTCD3-210ENST00000473829 HDAC1Q13547 482 aaPredicted RBP23.06■■□□□ 1.28
PTCD3-210ENST00000473829 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.06■■□□□ 1.28
PTCD3-210ENST00000473829 ANKRD13AQ8IZ07 590 aa23.06■■□□□ 1.28
PTCD3-210ENST00000473829 MAGEB6Q8N7X4 407 aa23.06■■□□□ 1.28
PTCD3-210ENST00000473829 AIDAQ96BJ3 306 aa23.06■■□□□ 1.28
PTCD3-210ENST00000473829 IGSF3O75054 1194 aa23.05■■□□□ 1.28
PTCD3-210ENST00000473829 CYP7A1P22680 504 aa23.05■■□□□ 1.28
PTCD3-210ENST00000473829 SPRYD7Q5W111 196 aa23.05■■□□□ 1.28
PTCD3-210ENST00000473829 MIGA2Q7L4E1 593 aa23.05■■□□□ 1.28
PTCD3-210ENST00000473829 CSRNP1Q96S65 589 aa23.05■■□□□ 1.28
PTCD3-210ENST00000473829 MYH7P12883 1935 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 SIPA1L1O43166 1804 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 DDTLA6NHG4 134 aaPredicted RBP23.04■■□□□ 1.28
PTCD3-210ENST00000473829 SLURP2P0DP57 97 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 GJA5P36382 358 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 PPP4CP60510 307 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 DYNLL1P63167 89 aaKnown RBP23.04■■□□□ 1.28
PTCD3-210ENST00000473829 AAMPQ13685 434 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 VGLL4Q14135 290 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 TSHZ3Q63HK5 1081 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms