RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 ELP3Q9H9T3 547 aa20.22■□□□□ 0.83
COL9A3-208ENST00000469802 RFX7Q2KHR2 1363 aa20.21■□□□□ 0.83
COL9A3-208ENST00000469802 LDHBP07195 334 aaKnown RBP20.21■□□□□ 0.83
COL9A3-208ENST00000469802 TIMM10P62072 90 aa20.21■□□□□ 0.83
COL9A3-208ENST00000469802 MAP3K9P80192 1104 aa20.21■□□□□ 0.83
COL9A3-208ENST00000469802 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.21■□□□□ 0.83
COL9A3-208ENST00000469802 AKAP2Q9Y2D5 859 aa20.21■□□□□ 0.83
COL9A3-208ENST00000469802 CDC42EP5Q6NZY7 148 aa20.2■□□□□ 0.82
COL9A3-208ENST00000469802 CNKSR2Q8WXI2 1034 aa20.2■□□□□ 0.82
COL9A3-208ENST00000469802 XAGE2Q96GT9 111 aa20.2■□□□□ 0.82
COL9A3-208ENST00000469802 MS4A4AQ96JQ5 239 aa20.2■□□□□ 0.82
COL9A3-208ENST00000469802 SNCAIPQ9Y6H5 919 aa20.2■□□□□ 0.82
COL9A3-208ENST00000469802 GAKO14976 1311 aa20.2■□□□□ 0.82
COL9A3-208ENST00000469802 FKTNO75072 461 aa20.19■□□□□ 0.82
COL9A3-208ENST00000469802 MVPQ14764 893 aaKnown RBP20.19■□□□□ 0.82
COL9A3-208ENST00000469802 PKN2Q16513 984 aaKnown RBP20.19■□□□□ 0.82
COL9A3-208ENST00000469802 ZGPATQ8N5A5 531 aaKnown RBP20.19■□□□□ 0.82
COL9A3-208ENST00000469802 FAM151AQ8WW52 585 aa20.19■□□□□ 0.82
COL9A3-208ENST00000469802 HOOK2Q96ED9 719 aa20.19■□□□□ 0.82
COL9A3-208ENST00000469802 PTPN18Q99952 460 aa20.19■□□□□ 0.82
COL9A3-208ENST00000469802 MYO5AQ9Y4I1 1855 aaKnown RBP20.18■□□□□ 0.82
COL9A3-208ENST00000469802 SPDYE5A6NIY4 337 aa20.18■□□□□ 0.82
COL9A3-208ENST00000469802 NFIAQ12857 509 aa20.18■□□□□ 0.82
COL9A3-208ENST00000469802 CSADQ9Y600 493 aa20.18■□□□□ 0.82
COL9A3-208ENST00000469802 HTTP42858 3142 aa20.18■□□□□ 0.82
COL9A3-208ENST00000469802 CDK5RAP2Q96SN8 1893 aa20.18■□□□□ 0.82
COL9A3-208ENST00000469802 POLA2Q14181 598 aa20.17■□□□□ 0.82
COL9A3-208ENST00000469802 DCAF15Q66K64 600 aa20.17■□□□□ 0.82
COL9A3-208ENST00000469802 WRNIP1Q96S55 665 aa20.17■□□□□ 0.82
COL9A3-208ENST00000469802 FAM198AQ9UFP1 575 aa20.17■□□□□ 0.82
COL9A3-208ENST00000469802 DOCK1Q14185 1865 aa20.17■□□□□ 0.82
COL9A3-208ENST00000469802 PTPRFP10586 1907 aa20.17■□□□□ 0.82
COL9A3-208ENST00000469802 ATRNL1Q5VV63 1379 aa20.17■□□□□ 0.82
COL9A3-208ENST00000469802 RBBP6Q7Z6E9 1792 aaKnown RBP20.16■□□□□ 0.82
COL9A3-208ENST00000469802 TNRC18O15417 2968 aaPredicted RBP20.16■□□□□ 0.82
COL9A3-208ENST00000469802 RLBP1P12271 317 aa20.16■□□□□ 0.82
COL9A3-208ENST00000469802 CRHR2Q13324 411 aa20.16■□□□□ 0.82
COL9A3-208ENST00000469802 BRI3BPQ8WY22 251 aa20.16■□□□□ 0.82
COL9A3-208ENST00000469802 HPS5Q9UPZ3 1129 aa20.16■□□□□ 0.82
COL9A3-208ENST00000469802 FOCADQ5VW36 1801 aa20.16■□□□□ 0.82
COL9A3-208ENST00000469802 PHIPQ8WWQ0 1821 aa20.16■□□□□ 0.82
COL9A3-208ENST00000469802 ARID4AP29374 1257 aaPredicted RBP20.15■□□□□ 0.82
COL9A3-208ENST00000469802 GTF2A2P52657 109 aa20.15■□□□□ 0.82
COL9A3-208ENST00000469802 OTUD7BQ6GQQ9 843 aa20.15■□□□□ 0.82
COL9A3-208ENST00000469802 SSH3Q8TE77 659 aa20.15■□□□□ 0.82
COL9A3-208ENST00000469802 ZKSCAN4Q969J2 545 aaPredicted RBP20.15■□□□□ 0.82
COL9A3-208ENST00000469802 OTUD5Q96G74 571 aa20.15■□□□□ 0.82
COL9A3-208ENST00000469802 FAM163AQ96GL9 167 aaPredicted RBP20.15■□□□□ 0.82
COL9A3-208ENST00000469802 TCP10Q12799 353 aa20.14■□□□□ 0.81
COL9A3-208ENST00000469802 FBXO46Q6PJ61 603 aaPredicted RBP20.14■□□□□ 0.81
COL9A3-208ENST00000469802 ERO1BQ86YB8 467 aa20.14■□□□□ 0.81
COL9A3-208ENST00000469802 DZIP1Q86YF9 867 aaKnown RBP20.14■□□□□ 0.81
COL9A3-208ENST00000469802 ZNF384Q8TF68 577 aa20.14■□□□□ 0.81
COL9A3-208ENST00000469802 IDI2Q9BXS1 227 aa20.14■□□□□ 0.81
COL9A3-208ENST00000469802 ZNF341Q9BYN7 854 aa20.14■□□□□ 0.81
COL9A3-208ENST00000469802 USP40Q9NVE5 1235 aa20.14■□□□□ 0.81
COL9A3-208ENST00000469802 HMG20BQ9P0W2 317 aa20.14■□□□□ 0.81
COL9A3-208ENST00000469802 ZNF112Q9UJU3 913 aa20.14■□□□□ 0.81
COL9A3-208ENST00000469802 ZSWIM8A7E2V4 1837 aa20.13■□□□□ 0.81
COL9A3-208ENST00000469802 MROH7-TTC4A0A0A0MT08 1334 aa20.13■□□□□ 0.81
COL9A3-208ENST00000469802 CCL15-CCL14A0A0B4J2E2 113 aa20.13■□□□□ 0.81
COL9A3-208ENST00000469802 MLLT1Q03111 559 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-208ENST00000469802 G3BP1Q13283 466 aaKnown RBP eCLIP20.13■□□□□ 0.81
COL9A3-208ENST00000469802 PPIL2Q13356 520 aa20.13■□□□□ 0.81
COL9A3-208ENST00000469802 CCL15Q16663 113 aa20.13■□□□□ 0.81
COL9A3-208ENST00000469802 SPTY2D1Q68D10 685 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-208ENST00000469802 FTSJ3Q8IY81 847 aaKnown RBP20.13■□□□□ 0.81
COL9A3-208ENST00000469802 NEUROD6Q96NK8 337 aa20.13■□□□□ 0.81
COL9A3-208ENST00000469802 ABCF2Q9UG63 623 aa20.13■□□□□ 0.81
COL9A3-208ENST00000469802 ATAD5Q96QE3 1844 aa20.12■□□□□ 0.81
COL9A3-208ENST00000469802 ZBTB7BO15156 539 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-208ENST00000469802 INPP5BP32019 993 aa20.12■□□□□ 0.81
COL9A3-208ENST00000469802 ATP8B2P98198 1209 aa20.12■□□□□ 0.81
COL9A3-208ENST00000469802 PI16Q6UXB8 463 aa20.12■□□□□ 0.81
COL9A3-208ENST00000469802 MIGA2Q7L4E1 593 aa20.12■□□□□ 0.81
COL9A3-208ENST00000469802 SPATA5Q8NB90 893 aa20.12■□□□□ 0.81
COL9A3-208ENST00000469802 C1orf115Q9H7X2 142 aa20.12■□□□□ 0.81
COL9A3-208ENST00000469802 GPR108Q9NPR9 543 aa20.12■□□□□ 0.81
COL9A3-208ENST00000469802 IRF6O14896 467 aa20.11■□□□□ 0.81
COL9A3-208ENST00000469802 ENTPD3O75355 529 aa20.11■□□□□ 0.81
COL9A3-208ENST00000469802 WDHD1O75717 1129 aaPredicted RBP20.11■□□□□ 0.81
COL9A3-208ENST00000469802 MCAMP43121 646 aa20.11■□□□□ 0.81
COL9A3-208ENST00000469802 RGS3P49796 1198 aa20.11■□□□□ 0.81
COL9A3-208ENST00000469802 MECOMQ03112 1051 aa20.11■□□□□ 0.81
COL9A3-208ENST00000469802 ITPRIPQ8IWB1 547 aa20.11■□□□□ 0.81
COL9A3-208ENST00000469802 ZFPM1Q8IX07 1006 aa20.11■□□□□ 0.81
COL9A3-208ENST00000469802 SLF2Q8IX21 1173 aa20.11■□□□□ 0.81
COL9A3-208ENST00000469802 FAM43AQ8N2R8 423 aa20.11■□□□□ 0.81
COL9A3-208ENST00000469802 SIPA1L1O43166 1804 aa20.11■□□□□ 0.81
COL9A3-208ENST00000469802 SOX10P56693 466 aa20.1■□□□□ 0.81
COL9A3-208ENST00000469802 PPATQ06203 517 aa20.1■□□□□ 0.81
COL9A3-208ENST00000469802 NOL9Q5SY16 702 aaKnown RBP20.1■□□□□ 0.81
COL9A3-208ENST00000469802 ERICH6Q7L0X2 663 aa20.1■□□□□ 0.81
COL9A3-208ENST00000469802 OTOP1Q7RTM1 612 aa20.1■□□□□ 0.81
COL9A3-208ENST00000469802 ERO1AQ96HE7 468 aa20.1■□□□□ 0.81
COL9A3-208ENST00000469802 ZCCHC17Q9NP64 241 aaKnown RBP20.1■□□□□ 0.81
COL9A3-208ENST00000469802 NOP58Q9Y2X3 529 aaKnown RBP20.1■□□□□ 0.81
COL9A3-208ENST00000469802 COL2A1P02458 1487 aaPredicted RBP20.1■□□□□ 0.81
COL9A3-208ENST00000469802 GPR75-ASB3A0A0A6YYF3 556 aa20.09■□□□□ 0.81
COL9A3-208ENST00000469802 CETPP11597 493 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms