RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 ABCF2Q9UG63 623 aa12.54□□□□□ -0.4
SF3A3-204ENST00000462258 RCAN3Q9UKA8 241 aa12.54□□□□□ -0.4
SF3A3-204ENST00000462258 MYO5AQ9Y4I1 1855 aaKnown RBP12.54□□□□□ -0.4
SF3A3-204ENST00000462258 GAKO14976 1311 aa12.54□□□□□ -0.4
SF3A3-204ENST00000462258 RFX7Q2KHR2 1363 aa12.54□□□□□ -0.4
SF3A3-204ENST00000462258 USP2O75604 605 aaPredicted RBP12.53□□□□□ -0.4
SF3A3-204ENST00000462258 SURF6O75683 361 aaKnown RBP12.53□□□□□ -0.4
SF3A3-204ENST00000462258 ARID4AP29374 1257 aaPredicted RBP12.53□□□□□ -0.4
SF3A3-204ENST00000462258 TNNI3KQ59H18 835 aa12.53□□□□□ -0.4
SF3A3-204ENST00000462258 CDC42EP5Q6NZY7 148 aa12.53□□□□□ -0.4
SF3A3-204ENST00000462258 PI16Q6UXB8 463 aa12.53□□□□□ -0.4
SF3A3-204ENST00000462258 SLC10A4Q96EP9 437 aa12.53□□□□□ -0.4
SF3A3-204ENST00000462258 GPR108Q9NPR9 543 aa12.53□□□□□ -0.4
SF3A3-204ENST00000462258 HMG20BQ9P0W2 317 aa12.53□□□□□ -0.4
SF3A3-204ENST00000462258 FPGT-TNNI3KV9GXZ4 949 aa12.53□□□□□ -0.4
SF3A3-204ENST00000462258 MANSC4A6NHS7 340 aaPredicted RBP12.52□□□□□ -0.41
SF3A3-204ENST00000462258 TM4SF4P48230 202 aa12.52□□□□□ -0.41
SF3A3-204ENST00000462258 NFIAQ12857 509 aa12.52□□□□□ -0.41
SF3A3-204ENST00000462258 VGLL4Q14135 290 aa12.52□□□□□ -0.41
SF3A3-204ENST00000462258 SPTY2D1Q68D10 685 aaPredicted RBP12.52□□□□□ -0.41
SF3A3-204ENST00000462258 SPATA5Q8NB90 893 aa12.52□□□□□ -0.41
SF3A3-204ENST00000462258 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.52□□□□□ -0.41
SF3A3-204ENST00000462258 HOOK2Q96ED9 719 aa12.52□□□□□ -0.41
SF3A3-204ENST00000462258 ELP3Q9H9T3 547 aa12.52□□□□□ -0.41
SF3A3-204ENST00000462258 DDX19BQ9UMR2 479 aa12.52□□□□□ -0.41
SF3A3-204ENST00000462258 NOP58Q9Y2X3 529 aaKnown RBP12.52□□□□□ -0.41
SF3A3-204ENST00000462258 FOCADQ5VW36 1801 aa12.52□□□□□ -0.41
SF3A3-204ENST00000462258 MROH7-TTC4A0A0A0MT08 1334 aa12.52□□□□□ -0.41
SF3A3-204ENST00000462258 CDK5RAP2Q96SN8 1893 aa12.52□□□□□ -0.41
SF3A3-204ENST00000462258 DOCK1Q14185 1865 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 UQCRFS1P1P0C7P4 283 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 GJA5P36382 358 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 MCAMP43121 646 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 TTC39AQ5SRH9 613 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 DCAF15Q66K64 600 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.51□□□□□ -0.41
SF3A3-204ENST00000462258 ERICH6Q7L0X2 663 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 SLF2Q8IX21 1173 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 FAM151AQ8WW52 585 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 OPTNQ96CV9 577 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 ABHD8Q96I13 439 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 WRNIP1Q96S55 665 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 DBNDD2Q9BQY9 259 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 USP40Q9NVE5 1235 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 COG6Q9Y2V7 657 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 CSADQ9Y600 493 aa12.51□□□□□ -0.41
SF3A3-204ENST00000462258 BTDP43251 543 aa12.5□□□□□ -0.41
SF3A3-204ENST00000462258 MECOMQ03112 1051 aa12.5□□□□□ -0.41
SF3A3-204ENST00000462258 TCP10Q12799 353 aa12.5□□□□□ -0.41
SF3A3-204ENST00000462258 MCOLN1Q9GZU1 580 aa12.5□□□□□ -0.41
SF3A3-204ENST00000462258 FAM198AQ9UFP1 575 aa12.5□□□□□ -0.41
SF3A3-204ENST00000462258 EXOC6BQ9Y2D4 811 aa12.5□□□□□ -0.41
SF3A3-204ENST00000462258 ATAD5Q96QE3 1844 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 TBC1D8O95759 1140 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 ALDH1A1P00352 501 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 MAP3K9P80192 1104 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 DGKZQ13574 1117 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 CCDC158Q5M9N0 1113 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 IFNL1Q8IU54 200 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 ERC1Q8IUD2 1116 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 ZNF384Q8TF68 577 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 CNKSR2Q8WXI2 1034 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 CFHR5Q9BXR6 569 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 ZNF341Q9BYN7 854 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 TLR7Q9NYK1 1049 aaKnown RBP12.49□□□□□ -0.41
SF3A3-204ENST00000462258 RAI14Q9P0K7 980 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 DBNLQ9UJU6 430 aaKnown RBP12.49□□□□□ -0.41
SF3A3-204ENST00000462258 SNCAIPQ9Y6H5 919 aa12.49□□□□□ -0.41
SF3A3-204ENST00000462258 ATRNL1Q5VV63 1379 aa12.48□□□□□ -0.41
SF3A3-204ENST00000462258 SPDYE5A6NIY4 337 aa12.48□□□□□ -0.41
SF3A3-204ENST00000462258 IGF2BP3O00425 579 aaKnown RBP eCLIP12.48□□□□□ -0.41
SF3A3-204ENST00000462258 RGS3P49796 1198 aa12.48□□□□□ -0.41
SF3A3-204ENST00000462258 INHBEP58166 350 aa12.48□□□□□ -0.41
SF3A3-204ENST00000462258 GSTO1P78417 241 aa12.48□□□□□ -0.41
SF3A3-204ENST00000462258 TBC1D9Q6ZT07 1266 aa12.48□□□□□ -0.41
SF3A3-204ENST00000462258 NSUN4Q96CB9 384 aaKnown RBP12.48□□□□□ -0.41
SF3A3-204ENST00000462258 OTUD5Q96G74 571 aa12.48□□□□□ -0.41
SF3A3-204ENST00000462258 FAM163AQ96GL9 167 aaPredicted RBP12.48□□□□□ -0.41
SF3A3-204ENST00000462258 IDI2Q9BXS1 227 aa12.48□□□□□ -0.41
SF3A3-204ENST00000462258 SIPA1L1O43166 1804 aa12.48□□□□□ -0.41
SF3A3-204ENST00000462258 COL2A1P02458 1487 aaPredicted RBP12.47□□□□□ -0.41
SF3A3-204ENST00000462258 HMMRO75330 724 aa12.47□□□□□ -0.41
SF3A3-204ENST00000462258 ENTPD3O75355 529 aa12.47□□□□□ -0.41
SF3A3-204ENST00000462258 WDHD1O75717 1129 aaPredicted RBP12.47□□□□□ -0.41
SF3A3-204ENST00000462258 PICALMQ13492 652 aa12.47□□□□□ -0.41
SF3A3-204ENST00000462258 HSP90AB4PQ58FF6 505 aa12.47□□□□□ -0.41
SF3A3-204ENST00000462258 NOM1Q5C9Z4 860 aaKnown RBP12.47□□□□□ -0.41
SF3A3-204ENST00000462258 MIGA2Q7L4E1 593 aa12.47□□□□□ -0.41
SF3A3-204ENST00000462258 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.47□□□□□ -0.41
SF3A3-204ENST00000462258 ZNF296Q8WUU4 475 aaPredicted RBP12.47□□□□□ -0.41
SF3A3-204ENST00000462258 ZKSCAN4Q969J2 545 aaPredicted RBP12.47□□□□□ -0.41
SF3A3-204ENST00000462258 EAF2Q96CJ1 260 aaPredicted RBP12.47□□□□□ -0.41
SF3A3-204ENST00000462258 CCDC8Q9H0W5 538 aaPredicted RBP12.47□□□□□ -0.41
SF3A3-204ENST00000462258 CHMP4BQ9H444 224 aaKnown RBP12.47□□□□□ -0.41
SF3A3-204ENST00000462258 SNRKQ9NRH2 765 aa12.47□□□□□ -0.41
SF3A3-204ENST00000462258 ZBTB40Q9NUA8 1239 aa12.47□□□□□ -0.41
SF3A3-204ENST00000462258 LRP2BPQ9P2M1 347 aa12.47□□□□□ -0.41
SF3A3-204ENST00000462258 PTPRFP10586 1907 aa12.47□□□□□ -0.41
SF3A3-204ENST00000462258 PHIPQ8WWQ0 1821 aa12.46□□□□□ -0.41
SF3A3-204ENST00000462258 GPR75-ASB3A0A0A6YYF3 556 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms