RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 BAG3O95817 575 aa21.2■□□□□ 0.98
USP48-204ENST00000400301 VAT1LQ9HCJ6 419 aa21.2■□□□□ 0.98
USP48-204ENST00000400301 ERLIN1O75477 346 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 DEXIO95424 95 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 SYT10Q6XYQ8 523 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 KIAA1328Q86T90 577 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 PKNOX2Q96KN3 472 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 RCOR1Q9UKL0 485 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 JAG2Q9Y219 1238 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 ATG3Q9NT62 314 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 KCNJ14Q9UNX9 436 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 LDHCP07864 332 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 KRT2P35908 639 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 NLRP12P59046 1061 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 FANCCQ00597 558 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 RRAGBQ5VZM2 374 aa21.19■□□□□ 0.98
USP48-204ENST00000400301 A0A087WWV3 80 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 PDE8BO95263 885 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 AKNAD1Q5T1N1 836 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 GPHNQ9NQX3 736 aaPredicted RBP21.18■□□□□ 0.98
USP48-204ENST00000400301 NRBP1Q9UHY1 535 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 CLIC4Q9Y696 253 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 CUTAO60888 179 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 CCDC87Q9NVE4 849 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 RIMBP3CA6NJZ7 1639 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 RIMBP3BA6NNM3 1639 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 RIMBP3Q9UFD9 1639 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 RPAP1Q9BWH6 1393 aaPredicted RBP21.18■□□□□ 0.98
USP48-204ENST00000400301 MYO5BQ9ULV0 1848 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 CCDC66A2RUB6 948 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 PFKFB1P16118 471 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 CARMIL3Q8ND23 1372 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 PATL2C9JE40 543 aaKnown RBP21.18■□□□□ 0.98
USP48-204ENST00000400301 NDUFA8P51970 172 aa21.18■□□□□ 0.98
USP48-204ENST00000400301 TDRD7Q8NHU6 1098 aaKnown RBP21.18■□□□□ 0.98
USP48-204ENST00000400301 PUS7LQ9H0K6 701 aaKnown RBP21.18■□□□□ 0.98
USP48-204ENST00000400301 BMP2KQ9NSY1 1161 aaPredicted RBP21.18■□□□□ 0.98
USP48-204ENST00000400301 POLR2DO15514 142 aaKnown RBP21.17■□□□□ 0.98
USP48-204ENST00000400301 CALM1P0DP23 149 aa21.17■□□□□ 0.98
USP48-204ENST00000400301 CALM2P0DP24 149 aa21.17■□□□□ 0.98
USP48-204ENST00000400301 CALM3P0DP25 149 aa21.17■□□□□ 0.98
USP48-204ENST00000400301 CCDC12Q8WUD4 166 aaPredicted RBP21.17■□□□□ 0.98
USP48-204ENST00000400301 RPGRQ92834 1020 aaKnown RBP21.17■□□□□ 0.98
USP48-204ENST00000400301 CCDC94Q9BW85 323 aaPredicted RBP21.17■□□□□ 0.98
USP48-204ENST00000400301 ZSWIM4Q9H7M6 989 aa21.17■□□□□ 0.98
USP48-204ENST00000400301 ZBTB1Q9Y2K1 713 aa21.17■□□□□ 0.98
USP48-204ENST00000400301 RICTORQ6R327 1708 aa21.17■□□□□ 0.98
USP48-204ENST00000400301 RUFY1Q96T51 708 aa21.17■□□□□ 0.98
USP48-204ENST00000400301 PYM1Q9BRP8 204 aaKnown RBP21.17■□□□□ 0.98
USP48-204ENST00000400301 TCP11L1Q9NUJ3 509 aa21.17■□□□□ 0.98
USP48-204ENST00000400301 MCM9Q9NXL9 1143 aa21.17■□□□□ 0.98
USP48-204ENST00000400301 IFNL3Q8IZI9 196 aa21.17■□□□□ 0.98
USP48-204ENST00000400301 ZMYND15Q9H091 742 aa21.16■□□□□ 0.98
USP48-204ENST00000400301 XPO4Q9C0E2 1151 aaKnown RBP21.16■□□□□ 0.98
USP48-204ENST00000400301 RTEL1Q9NZ71 1219 aa21.16■□□□□ 0.98
USP48-204ENST00000400301 V9GY48 417 aaPredicted RBP21.16■□□□□ 0.98
USP48-204ENST00000400301 PDE4CQ08493 712 aa21.16■□□□□ 0.98
USP48-204ENST00000400301 NOM1Q5C9Z4 860 aaKnown RBP21.16■□□□□ 0.98
USP48-204ENST00000400301 ZSCAN29Q8IWY8 852 aaPredicted RBP21.16■□□□□ 0.98
USP48-204ENST00000400301 SPATA31A3Q5VYP0 1347 aa21.15■□□□□ 0.98
USP48-204ENST00000400301 CHGBP05060 677 aa21.15■□□□□ 0.98
USP48-204ENST00000400301 UBE3CQ15386 1083 aa21.15■□□□□ 0.98
USP48-204ENST00000400301 C6orf229H3BNL8 230 aa21.15■□□□□ 0.98
USP48-204ENST00000400301 TSPY3P0CV98 308 aa21.15■□□□□ 0.98
USP48-204ENST00000400301 TSPY8P0CW00 308 aa21.15■□□□□ 0.98
USP48-204ENST00000400301 RBM5P52756 815 aaKnown RBP eCLIP21.15■□□□□ 0.98
USP48-204ENST00000400301 ZNF174Q15697 407 aa21.15■□□□□ 0.98
USP48-204ENST00000400301 CEP89Q96ST8 783 aa21.15■□□□□ 0.98
USP48-204ENST00000400301 NBPF26B4DH59 902 aa21.14■□□□□ 0.98
USP48-204ENST00000400301 NBPF14Q5TI25 921 aa21.14■□□□□ 0.98
USP48-204ENST00000400301 NBPF10Q6P3W6 841 aaKnown RBP21.14■□□□□ 0.98
USP48-204ENST00000400301 NBPF15Q8N660 670 aa21.14■□□□□ 0.98
USP48-204ENST00000400301 ZMYM6O95789 1325 aa21.14■□□□□ 0.98
USP48-204ENST00000400301 RFC4P35249 363 aa21.14■□□□□ 0.97
USP48-204ENST00000400301 C11orf57Q6ZUT1 292 aaPredicted RBP21.14■□□□□ 0.97
USP48-204ENST00000400301 TCEAL9Q9UHQ7 104 aa21.14■□□□□ 0.97
USP48-204ENST00000400301 DENND2AQ9ULE3 1009 aa21.14■□□□□ 0.97
USP48-204ENST00000400301 MPHOSPH10O00566 681 aaKnown RBP21.14■□□□□ 0.97
USP48-204ENST00000400301 STAT6P42226 847 aa21.14■□□□□ 0.97
USP48-204ENST00000400301 CMTR1Q8N1G2 835 aaKnown RBP21.14■□□□□ 0.97
USP48-204ENST00000400301 hCG_1642624A0A1W2PR95 340 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 VWA3AA6NCI4 1184 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 CMA1P23946 247 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 BCAMP50895 628 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 KIAA1524Q8TCG1 905 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 PGBD1Q96JS3 809 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 ERICH4A6NGS2 130 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 MCM7P33993 719 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 HEATR3Q7Z4Q2 680 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 NLRP10Q86W26 655 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 MRFAP1L1Q96HT8 127 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 AK7Q96M32 723 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 PNOCQ13519 176 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 PDIA6Q15084 440 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 RABL6Q3YEC7 729 aaPredicted RBP21.13■□□□□ 0.97
USP48-204ENST00000400301 TPTE2Q6XPS3 522 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 CTAGE1Q96RT6 745 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 A0A1W2PQ27 194 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 A0A1W2PQ64 194 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 A0A1W2PQD8 194 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms