RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ADD2P35612 726 aa14.68□□□□□ -0.06
SHMT1-205ENST00000395684 GABPB1Q06547 395 aaPredicted RBP14.68□□□□□ -0.06
SHMT1-205ENST00000395684 TRDNQ13061 729 aa14.68□□□□□ -0.06
SHMT1-205ENST00000395684 SLC9C2Q5TAH2 1124 aa14.68□□□□□ -0.06
SHMT1-205ENST00000395684 UBE2Q2LH0YL09 131 aa14.68□□□□□ -0.06
SHMT1-205ENST00000395684 PPP6R2O75170 966 aa14.68□□□□□ -0.06
SHMT1-205ENST00000395684 PTPN21Q16825 1174 aa14.68□□□□□ -0.06
SHMT1-205ENST00000395684 FOXP4Q8IVH2 680 aaPredicted RBP14.68□□□□□ -0.06
SHMT1-205ENST00000395684 KRT222Q8N1A0 295 aa14.68□□□□□ -0.06
SHMT1-205ENST00000395684 RIPOR2Q9Y4F9 1068 aa14.68□□□□□ -0.06
SHMT1-205ENST00000395684 DDX60Q8IY21 1712 aaKnown RBP14.67□□□□□ -0.06
SHMT1-205ENST00000395684 PARP4Q9UKK3 1724 aaKnown RBP14.67□□□□□ -0.06
SHMT1-205ENST00000395684 UBASH3AP57075 661 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 APOA5Q6Q788 366 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 RGS22Q8NE09 1264 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 TNS3Q68CZ2 1445 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 C4AP0C0L4 1744 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 C4BP0C0L5 1744 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 UBR2Q8IWV8 1755 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 FAM237AA0A1B0GTK4 181 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 PCCAP05165 728 aaPredicted RBP14.67□□□□□ -0.06
SHMT1-205ENST00000395684 TRIM28Q13263 835 aaKnown RBP14.67□□□□□ -0.06
SHMT1-205ENST00000395684 NKX1-1Q15270 411 aaPredicted RBP14.67□□□□□ -0.06
SHMT1-205ENST00000395684 NTRK3Q16288 839 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 LONRF3Q496Y0 759 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 METTL24Q5JXM2 366 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 METTL16Q86W50 562 aaKnown RBP14.67□□□□□ -0.06
SHMT1-205ENST00000395684 MICU3Q86XE3 530 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 PLA2G12BQ9BX93 195 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.67□□□□□ -0.06
SHMT1-205ENST00000395684 INCENPQ9NQS7 918 aa14.67□□□□□ -0.06
SHMT1-205ENST00000395684 ABCC12Q96J65 1359 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 SPATA31A3Q5VYP0 1347 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 RIC1Q4ADV7 1423 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 B4E1Z4 1266 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 FANCGO15287 622 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 SERPINC1P01008 464 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 APPP05067 770 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 MYL5Q02045 173 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 RESP18Q5W5W9 173 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 TOM1L2Q6ZVM7 507 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 TMX1Q9H3N1 280 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 PIH1D3Q9NQM4 214 aaKnown RBP14.66□□□□□ -0.06
SHMT1-205ENST00000395684 FAM217BQ9NTX9 383 aaPredicted RBP14.66□□□□□ -0.06
SHMT1-205ENST00000395684 RANBP6O60518 1105 aaKnown RBP14.66□□□□□ -0.06
SHMT1-205ENST00000395684 H2AFXP16104 143 aaPredicted RBP14.66□□□□□ -0.06
SHMT1-205ENST00000395684 ETF1P62495 437 aaKnown RBP14.66□□□□□ -0.06
SHMT1-205ENST00000395684 GOLGA8FQ08AF8 430 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 GOLGA8DPQ0D2H9 430 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 DHX8Q14562 1220 aaKnown RBP14.66□□□□□ -0.06
SHMT1-205ENST00000395684 ZNF771Q7L3S4 317 aaPredicted RBP14.66□□□□□ -0.06
SHMT1-205ENST00000395684 HOMER1Q86YM7 354 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 ZBTB38Q8NAP3 1195 aaPredicted RBP14.66□□□□□ -0.06
SHMT1-205ENST00000395684 IGDCC4Q8TDY8 1250 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 MYL10Q9BUA6 226 aa14.66□□□□□ -0.06
SHMT1-205ENST00000395684 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.66□□□□□ -0.06
SHMT1-205ENST00000395684 TMEM232C9JQI7 657 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 NRDCO43847 1150 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 CDKL5O76039 1030 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 BMP6P22004 513 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 GNL2Q13823 731 aaKnown RBP14.65□□□□□ -0.06
SHMT1-205ENST00000395684 CFAP100Q494V2 611 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 TRIM65Q6PJ69 517 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 LDHAL6AQ6ZMR3 332 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 JMYQ8N9B5 988 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 FANCLQ9NW38 375 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 DNAI1Q9UI46 699 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 TERF2Q15554 542 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.65□□□□□ -0.06
SHMT1-205ENST00000395684 GREM2Q9H772 168 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.65□□□□□ -0.06
SHMT1-205ENST00000395684 PCDHA5Q9Y5H7 936 aa14.65□□□□□ -0.06
SHMT1-205ENST00000395684 WDR17Q8IZU2 1322 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 FOXN1O15353 648 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 IDH1O75874 414 aaKnown RBP14.64□□□□□ -0.07
SHMT1-205ENST00000395684 TUBB4AP04350 444 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 ITGA6P23229 1130 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 PDE4BQ07343 736 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 VSTM4Q8IW00 320 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 UTP14AQ9BVJ6 771 aaKnown RBP14.64□□□□□ -0.07
SHMT1-205ENST00000395684 UBN2Q6ZU65 1347 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 ZNF532Q9HCE3 1301 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 ZBTB43O43298 467 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 IARSP41252 1262 aaKnown RBP14.64□□□□□ -0.07
SHMT1-205ENST00000395684 KRBA2Q6ZNG9 492 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 REXO1L1PQ8IX06 675 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 TTLL11Q8NHH1 800 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 LY9Q9HBG7 655 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 ST7Q9NRC1 585 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 INTS13Q9NVM9 706 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 KCNH3Q9ULD8 1083 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 TNS2Q63HR2 1409 aa14.64□□□□□ -0.07
SHMT1-205ENST00000395684 UBE3CQ15386 1083 aa14.63□□□□□ -0.07
SHMT1-205ENST00000395684 SPECC1Q5M775 1068 aa14.63□□□□□ -0.07
SHMT1-205ENST00000395684 CCDC102BQ68D86 513 aa14.63□□□□□ -0.07
SHMT1-205ENST00000395684 CPLX2Q6PUV4 134 aaKnown RBP14.63□□□□□ -0.07
SHMT1-205ENST00000395684 CNNM3Q8NE01 707 aa14.63□□□□□ -0.07
SHMT1-205ENST00000395684 WWC3Q9ULE0 1092 aa14.63□□□□□ -0.07
SHMT1-205ENST00000395684 CBFA2T2O43439 604 aa14.63□□□□□ -0.07
SHMT1-205ENST00000395684 CUTAO60888 179 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms