RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 KCNF1Q9H3M0 494 aa24.26■■□□□ 1.47
CCDC88B-203ENST00000359902 GOLGA6L6A8MZA4 724 aa24.26■■□□□ 1.47
CCDC88B-203ENST00000359902 STK38Q15208 465 aa24.26■■□□□ 1.47
CCDC88B-203ENST00000359902 KCNG4Q8TDN1 519 aa24.26■■□□□ 1.47
CCDC88B-203ENST00000359902 AIFM3Q96NN9 605 aa24.26■■□□□ 1.47
CCDC88B-203ENST00000359902 ZSWIM5Q9P217 1185 aa24.26■■□□□ 1.47
CCDC88B-203ENST00000359902 PRKAB2O43741 272 aa24.25■■□□□ 1.47
CCDC88B-203ENST00000359902 CDKL5O76039 1030 aa24.25■■□□□ 1.47
CCDC88B-203ENST00000359902 TMEM67Q5HYA8 995 aa24.25■■□□□ 1.47
CCDC88B-203ENST00000359902 ALG1Q9BT22 464 aa24.25■■□□□ 1.47
CCDC88B-203ENST00000359902 ZNF652Q9Y2D9 606 aa24.25■■□□□ 1.47
CCDC88B-203ENST00000359902 LAMB2P55268 1798 aa24.25■■□□□ 1.47
CCDC88B-203ENST00000359902 ZBTB43O43298 467 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 IQCB1Q15051 598 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 STX1AQ16623 288 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 PLA2G4DQ86XP0 818 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 LCORLQ8N3X6 602 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 SPTLC2O15270 562 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 LIFRP42702 1097 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 SF3A1Q15459 793 aaKnown RBP24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 NTRK3Q16288 839 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 CLEC4GQ6UXB4 293 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 C11orf57Q6ZUT1 292 aaPredicted RBP24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 MICU3Q86XE3 530 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 FAM217BQ9NTX9 383 aaPredicted RBP24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 PNPLA7Q6ZV29 1317 aa24.24■■□□□ 1.47
CCDC88B-203ENST00000359902 A0A1B0GVL5 298 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 GNAT2P19087 354 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 ZNF75DP51815 510 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 AKNAD1Q5T1N1 836 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 SYNE3Q6ZMZ3 975 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 NFXL1Q6ZNB6 911 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 C17orf53Q8N3J3 647 aaPredicted RBP24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 COL4A1P02462 1669 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 CPLX2Q6PUV4 134 aaKnown RBP24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 CCDC144CPQ8IYA2 1237 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 PHKBQ93100 1093 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 CDC5LQ99459 802 aaKnown RBP24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 TRIM5Q9C035 493 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 CNNM2Q9H8M5 875 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 SPTLC3Q9NUV7 552 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 BCL9LQ86UU0 1499 aa24.23■■□□□ 1.47
CCDC88B-203ENST00000359902 NDUFA8P51970 172 aa24.22■■□□□ 1.47
CCDC88B-203ENST00000359902 ANO1Q5XXA6 986 aa24.22■■□□□ 1.47
CCDC88B-203ENST00000359902 LRP2BPQ9P2M1 347 aa24.22■■□□□ 1.47
CCDC88B-203ENST00000359902 SLC4A4Q9Y6R1 1079 aa24.22■■□□□ 1.47
CCDC88B-203ENST00000359902 IFIT3O14879 490 aaKnown RBP24.22■■□□□ 1.47
CCDC88B-203ENST00000359902 ERFEQ4G0M1 354 aa24.22■■□□□ 1.47
CCDC88B-203ENST00000359902 KRT23Q9C075 422 aa24.22■■□□□ 1.47
CCDC88B-203ENST00000359902 KRT40Q6A162 431 aa24.21■■□□□ 1.47
CCDC88B-203ENST00000359902 MFSD6Q6ZSS7 791 aa24.21■■□□□ 1.47
CCDC88B-203ENST00000359902 MYL10Q9BUA6 226 aa24.21■■□□□ 1.47
CCDC88B-203ENST00000359902 NACAP1Q9BZK3 213 aa24.21■■□□□ 1.47
CCDC88B-203ENST00000359902 LTBP4Q8N2S1 1624 aa24.21■■□□□ 1.47
CCDC88B-203ENST00000359902 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.21■■□□□ 1.47
CCDC88B-203ENST00000359902 GOLGA8AA7E2F4 631 aa24.21■■□□□ 1.47
CCDC88B-203ENST00000359902 C3orf67Q6ZVT6 689 aa24.21■■□□□ 1.47
CCDC88B-203ENST00000359902 LINC00116Q8NCU8 138 aa24.21■■□□□ 1.47
CCDC88B-203ENST00000359902 KIAA1524Q8TCG1 905 aa24.21■■□□□ 1.47
CCDC88B-203ENST00000359902 RANBP6O60518 1105 aaKnown RBP24.2■■□□□ 1.46
CCDC88B-203ENST00000359902 TDO2P48775 406 aa24.2■■□□□ 1.46
CCDC88B-203ENST00000359902 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.2■■□□□ 1.46
CCDC88B-203ENST00000359902 MIGA1Q8NAN2 632 aa24.2■■□□□ 1.46
CCDC88B-203ENST00000359902 STAG1Q8WVM7 1258 aa24.2■■□□□ 1.46
CCDC88B-203ENST00000359902 PYCARDQ9ULZ3 195 aa24.2■■□□□ 1.46
CCDC88B-203ENST00000359902 SLC12A7Q9Y666 1083 aa24.2■■□□□ 1.46
CCDC88B-203ENST00000359902 COL5A3P25940 1745 aaPredicted RBP24.2■■□□□ 1.46
CCDC88B-203ENST00000359902 PTGS1P23219 599 aa24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 IARSP41252 1262 aaKnown RBP24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 SF3B3Q15393 1217 aaKnown RBP24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 AXDND1Q5T1B0 1012 aaPredicted RBP24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 SDF4Q9BRK5 362 aa24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 ANO10Q9NW15 660 aa24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 IQSEC3Q9UPP2 1182 aaPredicted RBP24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 ZNF804BA4D1E1 1349 aa24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 TIAM2Q8IVF5 1701 aa24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 VPS37DQ86XT2 251 aa24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 ANKRD18AQ8IVF6 992 aa24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 CHD4Q14839 1912 aa24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 BCORQ6W2J9 1755 aa24.19■■□□□ 1.46
CCDC88B-203ENST00000359902 A0A087WWV3 80 aa24.18■■□□□ 1.46
CCDC88B-203ENST00000359902 WTIPA6NIX2 430 aaPredicted RBP24.18■■□□□ 1.46
CCDC88B-203ENST00000359902 GOLGA6L19H0YKK7 550 aa24.18■■□□□ 1.46
CCDC88B-203ENST00000359902 ERCC4Q92889 916 aaPredicted RBP24.18■■□□□ 1.46
CCDC88B-203ENST00000359902 CCDC69A6NI79 296 aa24.18■■□□□ 1.46
CCDC88B-203ENST00000359902 SLC39A14Q15043 492 aa24.18■■□□□ 1.46
CCDC88B-203ENST00000359902 CYP7A1P22680 504 aa24.17■■□□□ 1.46
CCDC88B-203ENST00000359902 GYG1P46976 350 aa24.17■■□□□ 1.46
CCDC88B-203ENST00000359902 SARM1Q6SZW1 724 aa24.17■■□□□ 1.46
CCDC88B-203ENST00000359902 CCDC186Q7Z3E2 898 aa24.17■■□□□ 1.46
CCDC88B-203ENST00000359902 ADGRA1Q86SQ6 560 aa24.17■■□□□ 1.46
CCDC88B-203ENST00000359902 DRC7Q8IY82 874 aa24.17■■□□□ 1.46
CCDC88B-203ENST00000359902 RRP12Q5JTH9 1297 aaKnown RBP24.17■■□□□ 1.46
CCDC88B-203ENST00000359902 DNTTIP2Q5QJE6 756 aaKnown RBP24.17■■□□□ 1.46
CCDC88B-203ENST00000359902 BSDC1Q9NW68 430 aaPredicted RBP24.17■■□□□ 1.46
CCDC88B-203ENST00000359902 NRBP1Q9UHY1 535 aa24.17■■□□□ 1.46
CCDC88B-203ENST00000359902 WDHD1O75717 1129 aaPredicted RBP24.16■■□□□ 1.46
CCDC88B-203ENST00000359902 CMA1P23946 247 aa24.16■■□□□ 1.46
CCDC88B-203ENST00000359902 KCNQ4P56696 695 aa24.16■■□□□ 1.46
CCDC88B-203ENST00000359902 UBE4AQ14139 1066 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms