RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 GREM2Q9H772 168 aa25.44■■□□□ 1.66
SHMT1-201ENST00000316694 CNNM1Q9NRU3 951 aa25.44■■□□□ 1.66
SHMT1-201ENST00000316694 DDX60Q8IY21 1712 aaKnown RBP25.44■■□□□ 1.66
SHMT1-201ENST00000316694 KRT40Q6A162 431 aa25.43■■□□□ 1.66
SHMT1-201ENST00000316694 PLA2G12BQ9BX93 195 aa25.43■■□□□ 1.66
SHMT1-201ENST00000316694 SENP2Q9HC62 589 aa25.43■■□□□ 1.66
SHMT1-201ENST00000316694 RIPOR2Q9Y4F9 1068 aa25.43■■□□□ 1.66
SHMT1-201ENST00000316694 E4F1Q66K89 784 aaPredicted RBP25.43■■□□□ 1.66
SHMT1-201ENST00000316694 OGFRQ9NZT2 677 aa25.43■■□□□ 1.66
SHMT1-201ENST00000316694 B4E1Z4 1266 aa25.42■■□□□ 1.66
SHMT1-201ENST00000316694 SYTL4Q96C24 671 aaPredicted RBP25.42■■□□□ 1.66
SHMT1-201ENST00000316694 PIH1D3Q9NQM4 214 aaKnown RBP25.42■■□□□ 1.66
SHMT1-201ENST00000316694 KCND1Q9NSA2 647 aa25.42■■□□□ 1.66
SHMT1-201ENST00000316694 SH2B2O14492 632 aaPredicted RBP25.42■■□□□ 1.66
SHMT1-201ENST00000316694 CDKL5O76039 1030 aa25.42■■□□□ 1.66
SHMT1-201ENST00000316694 CDC27P30260 824 aa25.42■■□□□ 1.66
SHMT1-201ENST00000316694 PIGBQ92521 554 aa25.42■■□□□ 1.66
SHMT1-201ENST00000316694 ATP1A3P13637 1013 aa25.41■■□□□ 1.66
SHMT1-201ENST00000316694 APOA5Q6Q788 366 aa25.41■■□□□ 1.66
SHMT1-201ENST00000316694 KAT6BQ8WYB5 2073 aa25.41■■□□□ 1.66
SHMT1-201ENST00000316694 FANCCQ00597 558 aa25.41■■□□□ 1.66
SHMT1-201ENST00000316694 NFXL1Q6ZNB6 911 aa25.41■■□□□ 1.66
SHMT1-201ENST00000316694 PPP1R13BQ96KQ4 1090 aa25.41■■□□□ 1.66
SHMT1-201ENST00000316694 ZNF532Q9HCE3 1301 aa25.41■■□□□ 1.66
SHMT1-201ENST00000316694 TOGARAM1Q9Y4F4 1720 aa25.4■■□□□ 1.66
SHMT1-201ENST00000316694 AKAP11Q9UKA4 1901 aa25.4■■□□□ 1.66
SHMT1-201ENST00000316694 CPLX2Q6PUV4 134 aaKnown RBP25.4■■□□□ 1.66
SHMT1-201ENST00000316694 TTLL11Q8NHH1 800 aa25.4■■□□□ 1.66
SHMT1-201ENST00000316694 MYL10Q9BUA6 226 aa25.4■■□□□ 1.66
SHMT1-201ENST00000316694 GTPBP4Q9BZE4 634 aaKnown RBP25.4■■□□□ 1.66
SHMT1-201ENST00000316694 KIF2AO00139 706 aaPredicted RBP25.4■■□□□ 1.66
SHMT1-201ENST00000316694 HLFQ16534 295 aa25.4■■□□□ 1.66
SHMT1-201ENST00000316694 SHC4Q6S5L8 630 aa25.4■■□□□ 1.66
SHMT1-201ENST00000316694 PNOCQ13519 176 aa25.39■■□□□ 1.66
SHMT1-201ENST00000316694 TTF1Q15361 905 aaPredicted RBP25.39■■□□□ 1.66
SHMT1-201ENST00000316694 JMYQ8N9B5 988 aa25.39■■□□□ 1.66
SHMT1-201ENST00000316694 ERO1AQ96HE7 468 aa25.39■■□□□ 1.66
SHMT1-201ENST00000316694 CLIC6Q96NY7 704 aa25.39■■□□□ 1.66
SHMT1-201ENST00000316694 ANKRD18BA2A2Z9 1011 aa25.39■■□□□ 1.65
SHMT1-201ENST00000316694 NRDCO43847 1150 aa25.39■■□□□ 1.65
SHMT1-201ENST00000316694 ELF2Q15723 593 aa25.39■■□□□ 1.65
SHMT1-201ENST00000316694 INCENPQ9NQS7 918 aa25.39■■□□□ 1.65
SHMT1-201ENST00000316694 MYO5AQ9Y4I1 1855 aaKnown RBP25.38■■□□□ 1.65
SHMT1-201ENST00000316694 ZBTB43O43298 467 aa25.38■■□□□ 1.65
SHMT1-201ENST00000316694 SLU7O95391 586 aaKnown RBP25.38■■□□□ 1.65
SHMT1-201ENST00000316694 TIGD1Q96MW7 591 aa25.38■■□□□ 1.65
SHMT1-201ENST00000316694 IKBKBO14920 756 aa25.38■■□□□ 1.65
SHMT1-201ENST00000316694 IARSP41252 1262 aaKnown RBP25.38■■□□□ 1.65
SHMT1-201ENST00000316694 TRIM29Q14134 588 aa25.38■■□□□ 1.65
SHMT1-201ENST00000316694 DDX41Q9UJV9 622 aaKnown RBP25.38■■□□□ 1.65
SHMT1-201ENST00000316694 WWC3Q9ULE0 1092 aa25.38■■□□□ 1.65
SHMT1-201ENST00000316694 NPHP1O15259 732 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 PPP6R2O75170 966 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 PDE6AP16499 860 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 PHKA1P46020 1223 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 CTSWP56202 376 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 PTPAQ15257 358 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 KMT5BQ4FZB7 885 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 SYT10Q6XYQ8 523 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 GIGYF2Q6Y7W6 1299 aaKnown RBP25.37■■□□□ 1.65
SHMT1-201ENST00000316694 ZNF397Q8NF99 534 aaPredicted RBP25.37■■□□□ 1.65
SHMT1-201ENST00000316694 HSD3B7Q9H2F3 369 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 HPSEQ9Y251 543 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 MAP3K15Q6ZN16 1313 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 GOLGA8AA7E2F4 631 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 UBE2Q2LH0YL09 131 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 IGSF3O75054 1194 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 SERPINC1P01008 464 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 UBE3CQ15386 1083 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 NLRP10Q86W26 655 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 TUBE1Q9UJT0 475 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 TBC1D2BQ9UPU7 963 aa25.37■■□□□ 1.65
SHMT1-201ENST00000316694 TMEM67Q5HYA8 995 aa25.36■■□□□ 1.65
SHMT1-201ENST00000316694 AIDAQ96BJ3 306 aa25.36■■□□□ 1.65
SHMT1-201ENST00000316694 MAP3K14Q99558 947 aa25.36■■□□□ 1.65
SHMT1-201ENST00000316694 STARD3NLO95772 234 aa25.36■■□□□ 1.65
SHMT1-201ENST00000316694 CCDC102BQ68D86 513 aa25.36■■□□□ 1.65
SHMT1-201ENST00000316694 PSDA5PKW4 1024 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-201ENST00000316694 RANBP6O60518 1105 aaKnown RBP25.35■■□□□ 1.65
SHMT1-201ENST00000316694 UBASH3AP57075 661 aa25.35■■□□□ 1.65
SHMT1-201ENST00000316694 IGDCC4Q8TDY8 1250 aa25.35■■□□□ 1.65
SHMT1-201ENST00000316694 TMEM87BQ96K49 555 aa25.35■■□□□ 1.65
SHMT1-201ENST00000316694 ATRNO75882 1429 aa25.35■■□□□ 1.65
SHMT1-201ENST00000316694 CDHR2Q9BYE9 1310 aa25.35■■□□□ 1.65
SHMT1-201ENST00000316694 IRS4O14654 1257 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-201ENST00000316694 MYL5Q02045 173 aa25.35■■□□□ 1.65
SHMT1-201ENST00000316694 VGLL2Q8N8G2 317 aa25.35■■□□□ 1.65
SHMT1-201ENST00000316694 DPF2Q92785 391 aa25.35■■□□□ 1.65
SHMT1-201ENST00000316694 TEX13AQ9BXU3 409 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-201ENST00000316694 LY9Q9HBG7 655 aa25.35■■□□□ 1.65
SHMT1-201ENST00000316694 UBN2Q6ZU65 1347 aa25.34■■□□□ 1.65
SHMT1-201ENST00000316694 ZNF335Q9H4Z2 1342 aaPredicted RBP25.34■■□□□ 1.65
SHMT1-201ENST00000316694 PDE8BO95263 885 aa25.34■■□□□ 1.65
SHMT1-201ENST00000316694 CFAP100Q494V2 611 aa25.34■■□□□ 1.65
SHMT1-201ENST00000316694 RESP18Q5W5W9 173 aa25.34■■□□□ 1.65
SHMT1-201ENST00000316694 ZNF512BQ96KM6 892 aaPredicted RBP25.34■■□□□ 1.65
SHMT1-201ENST00000316694 SLC26A6Q9BXS9 759 aa25.34■■□□□ 1.65
SHMT1-201ENST00000316694 NTRK3Q16288 839 aa25.34■■□□□ 1.65
SHMT1-201ENST00000316694 FBXO38Q6PIJ6 1188 aa25.34■■□□□ 1.65
SHMT1-201ENST00000316694 HOMER1Q86YM7 354 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms