RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 DPPA3Q6W0C5 159 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 SDIM1Q6ZPB5 146 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 MIR17HGQ75NE6 70 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 SPATA12Q7Z6I5 190 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 LRRC28Q86X40 367 aaPredicted RBP1.2□□□□□ -2.22
CD44-239ENST00000639002 BPIFA4PQ86YQ2 179 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 MMGT1Q8N4V1 131 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 OR4C16Q8NGL9 310 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 OR5C1Q8NGR4 320 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 OR2T10Q8NGZ9 312 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 TMEM203Q969S6 136 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 PKMYT1Q99640 499 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 ADAT1Q9BUB4 502 aaKnown RBP1.2□□□□□ -2.22
CD44-239ENST00000639002 AICDAQ9GZX7 198 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 C11orf1Q9H5F2 150 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 TXNL4BQ9NX01 149 aaKnown RBP1.2□□□□□ -2.22
CD44-239ENST00000639002 CALML5Q9NZT1 146 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 TRAPPC2LQ9UL33 140 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 HEY1Q9Y5J3 304 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 TIMM9Q9Y5J7 89 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 R4GN34 69 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 OVOS2A0A0G2JMS6 1433 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 HIVEP3Q5T1R4 2406 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 EIF4G3O43432 1585 aaKnown RBP1.2□□□□□ -2.22
CD44-239ENST00000639002 REREQ9P2R6 1566 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 OBSL1O75147 1896 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 NUP205Q92621 2012 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 ZANQ9Y493 2812 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 UNC80Q8N2C7 3258 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 A2MP01023 1474 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 PDZD2O15018 2839 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 A0A087WX48 190 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 A0A0D9SG52 128 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 C7orf71A4D174 169 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 ARRDC5A6NEK1 342 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 CCDC160A6NGH7 325 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 ZNF860A6NHJ4 632 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 TMEM212A6NML5 194 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 FAM25AB3EWG3 89 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 FAM25CB3EWG5 89 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 FAM25GB3EWG6 89 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 GGTLC3B5MD39 225 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 C9JAW5 83 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 H3BPC8 53 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 K7EP13 123 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 K7ERU9 68 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 OR2T1O43869 369 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 TNFSF15O95150 251 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 CPSF4O95639 269 aaKnown RBP1.19□□□□□ -2.22
CD44-239ENST00000639002 IGHV3-7P01780 117 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 PAEPP09466 180 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 SCTP09683 121 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 CGB3P0DN86 165 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 CGB7P0DN87 165 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 GZMBP10144 247 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 CCL3P10147 92 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 FABP2P12104 132 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 RPS3P23396 243 aaKnown RBP eCLIP1.19□□□□□ -2.22
CD44-239ENST00000639002 CD24P25063 80 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 S100PP25815 95 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 SRIP30626 198 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 RPL35P42766 123 aaKnown RBP1.19□□□□□ -2.22
CD44-239ENST00000639002 ZNF80P51504 273 aaPredicted RBP1.19□□□□□ -2.22
CD44-239ENST00000639002 AQP4P55087 323 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 NCS1P62166 190 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 CRB1P82279 1406 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 ZNF117Q03924 483 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 VMA21Q3ZAQ7 101 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 MORN2Q502X0 79 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 LINC01554Q52M75 96 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 KHDC3LQ587J8 217 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 EIF5AL1Q6IS14 154 aaKnown RBP1.19□□□□□ -2.22
CD44-239ENST00000639002 CD109Q6YHK3 1445 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 SMG6Q86US8 1419 aaKnown RBP1.19□□□□□ -2.22
CD44-239ENST00000639002 PRR15Q8IV56 129 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 LRRC18Q8N456 261 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 OR52R1Q8NGF1 315 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 OR51A4Q8NGJ6 313 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 OR5D16Q8NGK9 328 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 CLDND2Q8NHS1 167 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 SMCR5Q8TEV8 140 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 RNASE6Q93091 150 aaKnown RBP1.19□□□□□ -2.22
CD44-239ENST00000639002 TMEM106AQ96A25 262 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 SLAMF6Q96DU3 332 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 TEX37Q96LM6 180 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 ZNF714Q96N38 554 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 GPX7Q96SL4 187 aaPredicted RBP1.19□□□□□ -2.22
CD44-239ENST00000639002 HIST1H2BLQ99880 126 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 TCEAL7Q9BRU2 100 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 UPK3BQ9BT76 320 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 SMIM3Q9BZL3 60 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 TMEM133Q9H2Q1 129 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 POPDC3Q9HBV1 291 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 NHP2Q9NX24 153 aaKnown RBP1.19□□□□□ -2.22
CD44-239ENST00000639002 NAT8Q9UHE5 227 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 NAT8BQ9UHF3 227 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 HIGD1AQ9Y241 93 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 RBM7Q9Y580 266 aaKnown RBP1.19□□□□□ -2.22
CD44-239ENST00000639002 U3KQ87 197 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 CFAP46Q8IYW2 2715 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms