RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 OR5AU1Q8NGC0 362 aa15.51■□□□□ 0.07
CLN3-250ENST00000636839 TECRQ9NZ01 308 aaKnown RBP15.51■□□□□ 0.07
CLN3-250ENST00000636839 HIGD1AQ9Y241 93 aa15.51■□□□□ 0.07
CLN3-250ENST00000636839 OR7C2O60412 319 aa15.51■□□□□ 0.07
CLN3-250ENST00000636839 OR2C1O95371 312 aa15.51■□□□□ 0.07
CLN3-250ENST00000636839 CXorf1O96002 111 aa15.51■□□□□ 0.07
CLN3-250ENST00000636839 FABP1P07148 127 aa15.51■□□□□ 0.07
CLN3-250ENST00000636839 SLC25A39Q9BZJ4 359 aaPredicted RBP15.51■□□□□ 0.07
CLN3-250ENST00000636839 SETD2Q9BYW2 2564 aaPredicted RBP15.51■□□□□ 0.07
CLN3-250ENST00000636839 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.5■□□□□ 0.07
CLN3-250ENST00000636839 LOC102723971A0A1B0GUV8 181 aa15.5■□□□□ 0.07
CLN3-250ENST00000636839 PAGE4O60829 102 aa15.5■□□□□ 0.07
CLN3-250ENST00000636839 ARL3P36405 182 aa15.5■□□□□ 0.07
CLN3-250ENST00000636839 SLC35B1P78383 322 aa15.5■□□□□ 0.07
CLN3-250ENST00000636839 ZNF343Q6P1L6 599 aa15.5■□□□□ 0.07
CLN3-250ENST00000636839 KLHDC1Q8N7A1 406 aa15.5■□□□□ 0.07
CLN3-250ENST00000636839 CRYBA1P05813 215 aa15.5■□□□□ 0.07
CLN3-250ENST00000636839 BCL2P10415 239 aa15.5■□□□□ 0.07
CLN3-250ENST00000636839 TCTEX1D4Q5JR98 221 aa15.5■□□□□ 0.07
CLN3-250ENST00000636839 UQCC3Q6UW78 93 aa15.5■□□□□ 0.07
CLN3-250ENST00000636839 MRPL32Q9BYC8 188 aaKnown RBP15.5■□□□□ 0.07
CLN3-250ENST00000636839 A0A0G2JLM5 398 aa15.49■□□□□ 0.07
CLN3-250ENST00000636839 ZNF207O43670 478 aaKnown RBP15.49■□□□□ 0.07
CLN3-250ENST00000636839 ADCYAP1P18509 176 aa15.49■□□□□ 0.07
CLN3-250ENST00000636839 FOXE3Q13461 319 aa15.49■□□□□ 0.07
CLN3-250ENST00000636839 ZNF506Q5JVG8 444 aa15.49■□□□□ 0.07
CLN3-250ENST00000636839 ZNF600Q6ZNG1 722 aa15.49■□□□□ 0.07
CLN3-250ENST00000636839 C18orf65Q6ZTR6 163 aa15.49■□□□□ 0.07
CLN3-250ENST00000636839 ZFAND3Q9H8U3 227 aa15.49■□□□□ 0.07
CLN3-250ENST00000636839 TMEM218A2RU14 115 aa15.48■□□□□ 0.07
CLN3-250ENST00000636839 PPT1P50897 306 aa15.48■□□□□ 0.07
CLN3-250ENST00000636839 BMPR1BO00238 502 aa15.48■□□□□ 0.07
CLN3-250ENST00000636839 CRLF1O75462 422 aa15.48■□□□□ 0.07
CLN3-250ENST00000636839 PEA15Q15121 130 aa15.48■□□□□ 0.07
CLN3-250ENST00000636839 UNQ9165/PRO28630Q6UXU0 137 aa15.48■□□□□ 0.07
CLN3-250ENST00000636839 RNF2Q99496 336 aa15.48■□□□□ 0.07
CLN3-250ENST00000636839 GAR1Q9NY12 217 aaKnown RBP15.48■□□□□ 0.07
CLN3-250ENST00000636839 YTHDF2Q9Y5A9 579 aaKnown RBP15.48■□□□□ 0.07
CLN3-250ENST00000636839 H3BTX0 84 aa15.47■□□□□ 0.07
CLN3-250ENST00000636839 ELANEP08246 267 aa15.47■□□□□ 0.07
CLN3-250ENST00000636839 SFTA3P0C7M3 94 aa15.47■□□□□ 0.07
CLN3-250ENST00000636839 KHDC3LQ587J8 217 aa15.47■□□□□ 0.07
CLN3-250ENST00000636839 TMEM89A2RUT3 159 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 CLPSL1A2RUU4 121 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 TAS2R45P59539 299 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 C11orf44Q8N8P7 122 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 LINC01006Q8NI28 216 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 MYOZ3Q8TDC0 251 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 SHANK2-AS3Q9BTD1 123 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 NIPBLQ6KC79 2804 aaeCLIP15.46■□□□□ 0.07
CLN3-250ENST00000636839 IGHV3OR16-13A0A075B7E8 117 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 IGHV3-49A0A0A0MS15 119 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 IGHV3-74A0A0B4J1X5 117 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 SCGB2A1O75556 95 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 ATP5G3P48201 142 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 PSMB3P49720 205 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 CEBPGP53567 150 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 CD81P60033 236 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 PQLC2Q6ZP29 291 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 PAXXQ9BUH6 204 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 C20orf24Q9BUV8 137 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 OR51M1Q9H341 326 aa15.46■□□□□ 0.07
CLN3-250ENST00000636839 H3BRN7 92 aa15.45■□□□□ 0.06
CLN3-250ENST00000636839 APOHP02749 345 aaPredicted RBP15.45■□□□□ 0.06
CLN3-250ENST00000636839 SRP19P09132 144 aaKnown RBP15.45■□□□□ 0.06
CLN3-250ENST00000636839 RPL15P61313 204 aaKnown RBP15.45■□□□□ 0.06
CLN3-250ENST00000636839 CST9LP1Q5W188 147 aa15.45■□□□□ 0.06
CLN3-250ENST00000636839 RNF152Q8N8N0 203 aa15.45■□□□□ 0.06
CLN3-250ENST00000636839 FXYD5Q96DB9 178 aa15.45■□□□□ 0.06
CLN3-250ENST00000636839 VAX2Q9UIW0 290 aa15.45■□□□□ 0.06
CLN3-250ENST00000636839 IGHV3-66A0A0C4DH42 116 aa15.44■□□□□ 0.06
CLN3-250ENST00000636839 ZNF98A6NK75 572 aa15.44■□□□□ 0.06
CLN3-250ENST00000636839 UBE2L3P68036 154 aaKnown RBP15.44■□□□□ 0.06
CLN3-250ENST00000636839 PMS2P11Q13670 270 aa15.44■□□□□ 0.06
CLN3-250ENST00000636839 PEF1Q9UBV8 284 aaKnown RBP15.44■□□□□ 0.06
CLN3-250ENST00000636839 GP9P14770 177 aa15.44■□□□□ 0.06
CLN3-250ENST00000636839 CYB561D1Q8N8Q1 229 aa15.44■□□□□ 0.06
CLN3-250ENST00000636839 ATP6V0BQ99437 205 aa15.44■□□□□ 0.06
CLN3-250ENST00000636839 TEP1Q99973 2627 aaKnown RBP15.43■□□□□ 0.06
CLN3-250ENST00000636839 HAX1O00165 279 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 MEF2BQ02080 365 aaPredicted RBP15.43■□□□□ 0.06
CLN3-250ENST00000636839 RELQ04864 619 aaPredicted RBP15.43■□□□□ 0.06
CLN3-250ENST00000636839 BLNKQ8WV28 456 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 MANBALQ9NQG1 85 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 RABAC1Q9UI14 185 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 FAM74A7A6NL05 159 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 H3BQ15 152 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 TCF21O43680 179 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 IFNA1P01562 189 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 ZP3P21754 424 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 OR4F5Q8NH21 305 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 WIPF2Q8TF74 440 aaPredicted RBP15.43■□□□□ 0.06
CLN3-250ENST00000636839 OR4F4Q96R69 305 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 SLC35B3Q9H1N7 401 aa15.43■□□□□ 0.06
CLN3-250ENST00000636839 C11orf94C9JXX5 98 aa15.42■□□□□ 0.06
CLN3-250ENST00000636839 F8W036 122 aa15.42■□□□□ 0.06
CLN3-250ENST00000636839 DEFB136Q30KP8 78 aa15.42■□□□□ 0.06
CLN3-250ENST00000636839 UBE2E2Q96LR5 201 aa15.42■□□□□ 0.06
CLN3-250ENST00000636839 C17orf77Q96MU5 243 aa15.42■□□□□ 0.06
CLN3-250ENST00000636839 JMJD8Q96S16 334 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms