RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 IFNA21P01568 189 aa13.81□□□□□ -0.2
CCDC28A-203ENST00000617445 MEOX2P50222 304 aa13.81□□□□□ -0.2
CCDC28A-203ENST00000617445 OR2F1Q13607 317 aa13.81□□□□□ -0.2
CCDC28A-203ENST00000617445 SPANXN5Q5MJ07 72 aa13.81□□□□□ -0.2
CCDC28A-203ENST00000617445 CLEC5AQ9NY25 188 aa13.81□□□□□ -0.2
CCDC28A-203ENST00000617445 ISLRO14498 428 aa13.8□□□□□ -0.2
CCDC28A-203ENST00000617445 FOXI2Q6ZQN5 318 aa13.8□□□□□ -0.2
CCDC28A-203ENST00000617445 BPIFCQ8NFQ6 507 aa13.8□□□□□ -0.2
CCDC28A-203ENST00000617445 SAV1Q9H4B6 383 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-203ENST00000617445 XCL2Q9UBD3 114 aa13.8□□□□□ -0.2
CCDC28A-203ENST00000617445 SOCS3O14543 225 aa13.79□□□□□ -0.2
CCDC28A-203ENST00000617445 OR4E1P0C645 316 aa13.79□□□□□ -0.2
CCDC28A-203ENST00000617445 GALR1P47211 349 aa13.79□□□□□ -0.2
CCDC28A-203ENST00000617445 OR4D5Q8NGN0 318 aa13.79□□□□□ -0.2
CCDC28A-203ENST00000617445 LINC00052Q96N35 136 aa13.79□□□□□ -0.2
CCDC28A-203ENST00000617445 GPR82Q96P67 336 aa13.79□□□□□ -0.2
CCDC28A-203ENST00000617445 NEU1Q99519 415 aa13.79□□□□□ -0.2
CCDC28A-203ENST00000617445 WDR12Q9GZL7 423 aaKnown RBP13.79□□□□□ -0.2
CCDC28A-203ENST00000617445 TRAV10A0A0B4J240 114 aa13.78□□□□□ -0.2
CCDC28A-203ENST00000617445 SMIM9A6NGZ8 99 aa13.78□□□□□ -0.2
CCDC28A-203ENST00000617445 ADAP1O75689 374 aa13.78□□□□□ -0.2
CCDC28A-203ENST00000617445 HLA-DMBP28068 263 aa13.78□□□□□ -0.2
CCDC28A-203ENST00000617445 AKR1C1Q04828 323 aa13.78□□□□□ -0.2
CCDC28A-203ENST00000617445 TMEM144Q7Z5S9 345 aa13.78□□□□□ -0.2
CCDC28A-203ENST00000617445 ELOA3CA0A087WX78 387 aaPredicted RBP13.77□□□□□ -0.21
CCDC28A-203ENST00000617445 IL7P13232 177 aa13.77□□□□□ -0.21
CCDC28A-203ENST00000617445 EBLN2Q6P2I7 272 aa13.77□□□□□ -0.21
CCDC28A-203ENST00000617445 LINC00299Q6ZSB3 139 aa13.77□□□□□ -0.21
CCDC28A-203ENST00000617445 SMIM8Q96KF7 97 aa13.77□□□□□ -0.21
CCDC28A-203ENST00000617445 TMEM147Q9BVK8 224 aa13.77□□□□□ -0.21
CCDC28A-203ENST00000617445 PSENENQ9NZ42 101 aa13.77□□□□□ -0.21
CCDC28A-203ENST00000617445 FLVCR2Q9UPI3 526 aa13.77□□□□□ -0.21
CCDC28A-203ENST00000617445 EPPK1P58107 5090 aaKnown RBP13.77□□□□□ -0.21
CCDC28A-203ENST00000617445 TMEM189A5PLL7 270 aa13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 ZNF98A6NK75 572 aa13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 IGLL5B9A064 214 aa13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 PAX9P55771 341 aa13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 POLR2GP62487 172 aaKnown RBP eCLIP13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 C4orf46Q504U0 113 aa13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 ZNF705AQ6ZN79 300 aaPredicted RBP13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 ACOT7LQ6ZUV0 252 aa13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 S100A7AQ86SG5 101 aa13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 OR1B1Q8NGR6 318 aa13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 RPRMQ9NS64 109 aa13.76□□□□□ -0.21
CCDC28A-203ENST00000617445 LINC00854A0A1B0GVQ3 168 aa13.75□□□□□ -0.21
CCDC28A-203ENST00000617445 FNDC10F2Z333 226 aa13.75□□□□□ -0.21
CCDC28A-203ENST00000617445 H3BP45 60 aa13.75□□□□□ -0.21
CCDC28A-203ENST00000617445 ORM2P19652 201 aa13.75□□□□□ -0.21
CCDC28A-203ENST00000617445 SELENOTP62341 195 aa13.75□□□□□ -0.21
CCDC28A-203ENST00000617445 GDF5OSQ5U4N7 250 aa13.75□□□□□ -0.21
CCDC28A-203ENST00000617445 C16orf92Q96LL3 132 aa13.75□□□□□ -0.21
CCDC28A-203ENST00000617445 KMT2AQ03164 3969 aa13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 A6NHS1 94 aa13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 ZNF705FA8MVS1 300 aaPredicted RBP13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 ZNF705DP0CH99 300 aaPredicted RBP13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 ZNF705BP0CI00 300 aaPredicted RBP13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 TAS2R30P59541 319 aa13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 PSG9Q00887 426 aa13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 Q6ZTC4 211 aa13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 OR4B1Q8NGF8 309 aa13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 RSG1Q9BU20 258 aa13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 SLC25A32Q9H2D1 315 aa13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 SLC25A22Q9H936 323 aa13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 APLNQ9ULZ1 77 aa13.74□□□□□ -0.21
CCDC28A-203ENST00000617445 SSSCA1O60232 199 aa13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 IL5P05113 134 aa13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 ANXA7P20073 488 aaKnown RBP13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 BTCP35070 178 aa13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 DLK1P80370 383 aa13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 IAH1Q2TAA2 248 aaPredicted RBP13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 CYP2G1PQ6ZSU1 146 aa13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 RPP25LQ8N5L8 163 aaKnown RBP13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 MITD1Q8WV92 249 aa13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 RNF126Q9BV68 326 aa13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 NPVFQ9HCQ7 196 aa13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 RNF24Q9Y225 148 aa13.73□□□□□ -0.21
CCDC28A-203ENST00000617445 A0A0J9YX75 114 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 SMCO3A2RU48 225 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 PMS2P5A8MQ11 134 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 TSC22D2O75157 780 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 IGKV3-20P01619 116 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 GATA2P23769 480 aaPredicted RBP13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 PLP1P60201 277 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 RAP2BP61225 183 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 TMEM14EPQ6UXP3 125 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 TMEM182Q6ZP80 229 aaPredicted RBP13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 ZNF709Q8N972 641 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 OR10P1Q8NGE3 313 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 S100ZQ8WXG8 99 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 CCDC32Q9BV29 185 aa13.72□□□□□ -0.21
CCDC28A-203ENST00000617445 TEX48A0A1B0GUV7 120 aa13.71□□□□□ -0.21
CCDC28A-203ENST00000617445 LYRM1O43325 122 aa13.71□□□□□ -0.21
CCDC28A-203ENST00000617445 HYPMO75409 117 aa13.71□□□□□ -0.21
CCDC28A-203ENST00000617445 DEFB1P60022 68 aa13.71□□□□□ -0.21
CCDC28A-203ENST00000617445 C12orf74Q32Q52 190 aa13.71□□□□□ -0.21
CCDC28A-203ENST00000617445 FAM78BQ5VT40 261 aa13.71□□□□□ -0.21
CCDC28A-203ENST00000617445 DOK5Q9P104 306 aa13.71□□□□□ -0.21
CCDC28A-203ENST00000617445 HIGD1AQ9Y241 93 aa13.71□□□□□ -0.21
CCDC28A-203ENST00000617445 GOLT1BQ9Y3E0 138 aa13.71□□□□□ -0.21
CCDC28A-203ENST00000617445 RFNGQ9Y644 331 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 120.2 ms