RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ZNF256Q9Y2P7 627 aaPredicted RBP6.64□□□□□ -1.35
TRIM28-214ENST00000600840 TMA7Q9Y2S6 64 aaKnown RBP6.64□□□□□ -1.35
TRIM28-214ENST00000600840 OR2T8A6NH00 312 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 TGOLN2O43493 480 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 OR2C1O95371 312 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 IFNA5P01569 189 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 CD5P06127 495 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 GPR183P32249 361 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 NPBWR1P48145 328 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 CAMLGP49069 296 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 RND2P52198 227 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 YPEL3P61236 119 aaPredicted RBP6.63□□□□□ -1.35
TRIM28-214ENST00000600840 BTN1A1Q13410 526 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 ATP6V1FQ16864 119 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 OR8G2PQ6IF36 304 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 SPSB3Q6PJ21 355 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 Q6ZRG5 221 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 SBSPONQ8IVN8 264 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 CLRN3Q8NCR9 226 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 ATP5SQ99766 215 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 WDR83OSQ9Y284 106 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 HYDINQ4G0P3 5121 aa6.63□□□□□ -1.35
TRIM28-214ENST00000600840 LINC01619G3V211 115 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 LGALS9O00182 355 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 GGCTO75223 188 aaKnown RBP6.62□□□□□ -1.35
TRIM28-214ENST00000600840 NDUFS6O75380 124 aaKnown RBP6.62□□□□□ -1.35
TRIM28-214ENST00000600840 SAP30O75446 220 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 ARL3P36405 182 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 SLC38A11Q08AI6 406 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 TIGITQ495A1 244 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 ACSM6Q6P461 480 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 UNQ9165/PRO28630Q6UXU0 137 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 RCHY1Q96PM5 261 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 TRGV9Q99603 122 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 HRH4Q9H3N8 390 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 ZFAND3Q9H8U3 227 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 NPVFQ9HCQ7 196 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 ZMAT5Q9UDW3 170 aaKnown RBP6.62□□□□□ -1.35
TRIM28-214ENST00000600840 STAB2Q8WWQ8 2551 aa6.62□□□□□ -1.35
TRIM28-214ENST00000600840 DNAH1Q9P2D7 4330 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 TRAV30A0A087WSZ9 112 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 GNG7O60262 68 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 H2AFB1P0C5Y9 115 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 LINC00869P0C866 280 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 C8orf88P0DMB2 117 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 OR10J1P30954 320 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 TAGLN2P37802 199 aaKnown RBP6.61□□□□□ -1.35
TRIM28-214ENST00000600840 INSL3P51460 131 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 SERF2P84101 59 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 ZNF90Q03938 601 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 Q56UQ5 140 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 AKR1C8PQ5T2L2 129 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 FAM122CQ6P4D5 195 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 TOMM20LQ6UXN7 152 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 TMEM217Q8N7C4 229 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 STPG3Q8N7X2 389 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 OR5C1Q8NGR4 320 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 ACY3Q96HD9 319 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 PSMG3Q9BT73 122 aaPredicted RBP6.61□□□□□ -1.35
TRIM28-214ENST00000600840 SLC45A2Q9UMX9 530 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 SMAD5-AS1Q9Y6J3 95 aa6.61□□□□□ -1.35
TRIM28-214ENST00000600840 TRAV1-1A0A0B4J248 108 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 IGHV3-35A0A0C4DH35 117 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 LOC105371267A0A1B0GV96 52 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 A8MWP6 167 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 K7EMT4 169 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 DNASE2O00115 360 aaPredicted RBP6.6□□□□□ -1.35
TRIM28-214ENST00000600840 NDUFA4O00483 81 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 TSPAN4O14817 238 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 NUPL2O15504 423 aaKnown RBP6.6□□□□□ -1.35
TRIM28-214ENST00000600840 SCO1O75880 301 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 TOMM40O96008 361 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 CSN3P07498 182 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 FRMD6-AS1P0C7T7 363 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 PSG1P11464 419 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 GP9P14770 177 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 EDN2P20800 178 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 PLP1P60201 277 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 PRR20EP86478 221 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 PRR20CP86479 221 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 PRR20DP86480 221 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 PRR20BP86481 221 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 PRR20AP86496 221 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 FLI1Q01543 452 aaPredicted RBP6.6□□□□□ -1.35
TRIM28-214ENST00000600840 ZNF600Q6ZNG1 722 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 Q8N1Y9 231 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 SCGB1C1Q8TD33 95 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 TMEM190Q8WZ59 177 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 SLC35E1Q96K37 410 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 MGST2Q99735 147 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 TMEM147Q9BVK8 224 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 SMIM3Q9BZL3 60 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 WDR61Q9GZS3 305 aaKnown RBP6.6□□□□□ -1.35
TRIM28-214ENST00000600840 TUBA4BQ9H853 241 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 TIMM9Q9Y5J7 89 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 U3KQE9 123 aa6.6□□□□□ -1.35
TRIM28-214ENST00000600840 TMEM213A2RRL7 107 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 RBMY1BA6NDE4 496 aaKnown RBP6.59□□□□□ -1.35
TRIM28-214ENST00000600840 RBMY1EA6NEQ0 496 aaKnown RBP6.59□□□□□ -1.35
TRIM28-214ENST00000600840 MBP02144 154 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms