RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 LRRC37A5PQ49AS3 106 aa14.45□□□□□ -0.1
SHKBP1-221ENST00000599833 SLC45A2Q9UMX9 530 aa14.45□□□□□ -0.1
SHKBP1-221ENST00000599833 WDR83OSQ9Y284 106 aa14.45□□□□□ -0.1
SHKBP1-221ENST00000599833 CFDP00746 253 aaPredicted RBP14.44□□□□□ -0.1
SHKBP1-221ENST00000599833 LYL1P12980 280 aa14.44□□□□□ -0.1
SHKBP1-221ENST00000599833 NHLH2Q02577 135 aa14.44□□□□□ -0.1
SHKBP1-221ENST00000599833 TEPPQ6URK8 271 aa14.44□□□□□ -0.1
SHKBP1-221ENST00000599833 PATE2Q6UY27 113 aa14.44□□□□□ -0.1
SHKBP1-221ENST00000599833 TMEM217Q8N7C4 229 aa14.44□□□□□ -0.1
SHKBP1-221ENST00000599833 DYNC2H1Q8NCM8 4307 aaKnown RBP14.44□□□□□ -0.1
SHKBP1-221ENST00000599833 AGRNO00468 2067 aa14.43□□□□□ -0.1
SHKBP1-221ENST00000599833 E5RGE8 158 aa14.43□□□□□ -0.1
SHKBP1-221ENST00000599833 EWSR1Q01844 656 aaKnown RBP eCLIP14.43□□□□□ -0.1
SHKBP1-221ENST00000599833 BPIFCQ8NFQ6 507 aa14.43□□□□□ -0.1
SHKBP1-221ENST00000599833 TUBA4BQ9H853 241 aa14.43□□□□□ -0.1
SHKBP1-221ENST00000599833 AGPAT2O15120 278 aa14.42□□□□□ -0.1
SHKBP1-221ENST00000599833 LINC00869P0C866 280 aa14.42□□□□□ -0.1
SHKBP1-221ENST00000599833 SELENOTP62341 195 aa14.42□□□□□ -0.1
SHKBP1-221ENST00000599833 C1orf194Q5T5A4 169 aa14.42□□□□□ -0.1
SHKBP1-221ENST00000599833 SIGLEC15Q6ZMC9 328 aa14.42□□□□□ -0.1
SHKBP1-221ENST00000599833 WFDC3Q8IUB2 231 aa14.42□□□□□ -0.1
SHKBP1-221ENST00000599833 APRG1Q8IVJ8 170 aa14.42□□□□□ -0.1
SHKBP1-221ENST00000599833 GRAMD2BQ96HH9 432 aa14.42□□□□□ -0.1
SHKBP1-221ENST00000599833 NARS2Q96I59 477 aaKnown RBP14.42□□□□□ -0.1
SHKBP1-221ENST00000599833 HELTA6NFD8 242 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 H3BRN7 92 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 SOCS3O14543 225 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 S100A11P31949 105 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 PRR20EP86478 221 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 PRR20CP86479 221 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 PRR20DP86480 221 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 PRR20BP86481 221 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 PRR20AP86496 221 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 STXBP6Q8NFX7 210 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 TMEM147Q9BVK8 224 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 UQCC1Q9NVA1 299 aa14.41□□□□□ -0.1
SHKBP1-221ENST00000599833 ZNF98A6NK75 572 aa14.4□□□□□ -0.1
SHKBP1-221ENST00000599833 ORM2P19652 201 aa14.4□□□□□ -0.1
SHKBP1-221ENST00000599833 RPL11P62913 178 aaKnown RBP14.4□□□□□ -0.1
SHKBP1-221ENST00000599833 PAFAH1B2P68402 229 aa14.4□□□□□ -0.1
SHKBP1-221ENST00000599833 STX12Q86Y82 276 aa14.4□□□□□ -0.1
SHKBP1-221ENST00000599833 CHAC2Q8WUX2 184 aa14.4□□□□□ -0.1
SHKBP1-221ENST00000599833 GGTLC1Q9BX51 225 aa14.4□□□□□ -0.1
SHKBP1-221ENST00000599833 SLC25A32Q9H2D1 315 aa14.4□□□□□ -0.1
SHKBP1-221ENST00000599833 KMT2CQ8NEZ4 4911 aaKnown RBP14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 RLN2P04090 185 aa14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 NUP62P37198 522 aaPredicted RBP14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 ZNF546Q86UE3 836 aa14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 OR1B1Q8NGR6 318 aa14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 SHANK2-AS3Q9BTD1 123 aa14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 SCRT1Q9BWW7 348 aa14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 SLC25A39Q9BZJ4 359 aaPredicted RBP14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 NRN1Q9NPD7 142 aa14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 DOK5Q9P104 306 aa14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 MBD2Q9UBB5 411 aa14.39□□□□□ -0.11
SHKBP1-221ENST00000599833 UBE2L5PA0A1B0GUS4 154 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 DNASE2O00115 360 aaPredicted RBP14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 AP2S1P53680 142 aaPredicted RBP14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 DEFB131AP59861 70 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 OPCMLQ14982 345 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 ATP6V1FQ16864 119 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 Q5BKY6 102 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 LEMD1Q68G75 181 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 OR5C1Q8NGR4 320 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 TMEM37Q8WXS4 190 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 UHRF2Q96PU4 802 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 MED28Q9H204 178 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 RETNQ9HD89 108 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 U3KQK5 164 aa14.38□□□□□ -0.11
SHKBP1-221ENST00000599833 LOC102724200A0A096LPH7 203 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 G3V3Q6 166 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 MRPS12O15235 138 aaKnown RBP14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 HYPMO75409 117 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 ZNF688P0C7X2 276 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 CAMLGP49069 296 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 CMC4P56277 68 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 HBG1P69891 147 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 HBG2P69892 147 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 BAXQ07812 192 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 RCHY1Q96PM5 261 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 LYSTQ99698 3801 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 SLC25A31Q9H0C2 315 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 ARL6Q9H0F7 186 aa14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 SEPSECSQ9HD40 501 aaKnown RBP14.37□□□□□ -0.11
SHKBP1-221ENST00000599833 MORN5Q5VZ52 161 aa14.36□□□□□ -0.11
SHKBP1-221ENST00000599833 MIC13Q5XKP0 118 aa14.36□□□□□ -0.11
SHKBP1-221ENST00000599833 FBXL17Q9UF56 701 aa14.36□□□□□ -0.11
SHKBP1-221ENST00000599833 HIGD1AQ9Y241 93 aa14.36□□□□□ -0.11
SHKBP1-221ENST00000599833 HSPB11Q9Y547 144 aa14.36□□□□□ -0.11
SHKBP1-221ENST00000599833 PET100P0DJ07 73 aa14.35□□□□□ -0.11
SHKBP1-221ENST00000599833 RPL29P47914 159 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-221ENST00000599833 PXDC1Q5TGL8 231 aa14.35□□□□□ -0.11
SHKBP1-221ENST00000599833 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.35□□□□□ -0.11
SHKBP1-221ENST00000599833 ARV1Q9H2C2 271 aa14.35□□□□□ -0.11
SHKBP1-221ENST00000599833 GIPP09681 153 aaPredicted RBP14.34□□□□□ -0.11
SHKBP1-221ENST00000599833 FGF7P21781 194 aa14.34□□□□□ -0.11
SHKBP1-221ENST00000599833 RPL12P30050 165 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-221ENST00000599833 PLECQ15149 4684 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-221ENST00000599833 OR8I2Q8N0Y5 310 aa14.34□□□□□ -0.11
SHKBP1-221ENST00000599833 SPATA25Q9BR10 227 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms