RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 GRNP28799 593 aaKnown RBP18.11■□□□□ 0.49
VPS53-211ENST00000571805 CA7P43166 264 aa18.11■□□□□ 0.49
VPS53-211ENST00000571805 LDLRAD2Q5SZI1 272 aa18.11■□□□□ 0.49
VPS53-211ENST00000571805 ZNF705AQ6ZN79 300 aaPredicted RBP18.11■□□□□ 0.49
VPS53-211ENST00000571805 RNF5Q99942 180 aa18.11■□□□□ 0.49
VPS53-211ENST00000571805 CEP295Q9C0D2 2601 aa18.11■□□□□ 0.49
VPS53-211ENST00000571805 ABCA1O95477 2261 aa18.1■□□□□ 0.49
VPS53-211ENST00000571805 A0A1B0GXF2 115 aa18.1■□□□□ 0.49
VPS53-211ENST00000571805 OR2J3O76001 311 aa18.1■□□□□ 0.49
VPS53-211ENST00000571805 ATP5L2Q7Z4Y8 100 aa18.1■□□□□ 0.49
VPS53-211ENST00000571805 FAM19A2Q8N3H0 131 aa18.1■□□□□ 0.49
VPS53-211ENST00000571805 C19orf71A6NCJ1 209 aa18.09■□□□□ 0.49
VPS53-211ENST00000571805 KLF5Q13887 457 aaPredicted RBP18.09■□□□□ 0.49
VPS53-211ENST00000571805 ZNF672Q499Z4 452 aaPredicted RBP18.09■□□□□ 0.49
VPS53-211ENST00000571805 LYZP61626 148 aa18.09■□□□□ 0.49
VPS53-211ENST00000571805 LY6G5BQ8NDX9 201 aa18.09■□□□□ 0.49
VPS53-211ENST00000571805 ALKBH7Q9BT30 221 aaPredicted RBP18.09■□□□□ 0.49
VPS53-211ENST00000571805 SSBP4Q9BWG4 385 aaPredicted RBP18.09■□□□□ 0.49
VPS53-211ENST00000571805 WNT10AQ9GZT5 417 aa18.09■□□□□ 0.49
VPS53-211ENST00000571805 RPP21Q9H633 154 aaKnown RBP18.09■□□□□ 0.49
VPS53-211ENST00000571805 PTPRZ1P23471 2315 aaPredicted RBP18.08■□□□□ 0.49
VPS53-211ENST00000571805 FBXL19-AS1Q494R0 122 aa18.08■□□□□ 0.48
VPS53-211ENST00000571805 SLC25A39Q9BZJ4 359 aaPredicted RBP18.08■□□□□ 0.48
VPS53-211ENST00000571805 TMEM14CQ9P0S9 112 aa18.08■□□□□ 0.48
VPS53-211ENST00000571805 ZNF492Q9P255 531 aa18.08■□□□□ 0.48
VPS53-211ENST00000571805 DCHS2Q6V1P9 2916 aa18.08■□□□□ 0.48
VPS53-211ENST00000571805 FAM90A27PA6NNH2 459 aa18.08■□□□□ 0.48
VPS53-211ENST00000571805 C3orf79P0CE67 100 aa18.08■□□□□ 0.48
VPS53-211ENST00000571805 CAMPP49913 170 aa18.08■□□□□ 0.48
VPS53-211ENST00000571805 TCF24Q7RTU0 167 aa18.08■□□□□ 0.48
VPS53-211ENST00000571805 SCNM1Q9BWG6 230 aa18.08■□□□□ 0.48
VPS53-211ENST00000571805 LRBAP50851 2863 aa18.07■□□□□ 0.48
VPS53-211ENST00000571805 GPR6P46095 362 aaPredicted RBP18.07■□□□□ 0.48
VPS53-211ENST00000571805 TIMM23O14925 209 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 IGKV1-17P01599 117 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 CTRLP40313 264 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 CT83Q5H943 113 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 MRPL52Q86TS9 123 aaKnown RBP18.06■□□□□ 0.48
VPS53-211ENST00000571805 OR4B1Q8NGF8 309 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 OR8B3Q8NGG8 313 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 OR8B2Q96RD0 313 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 SRSF8Q9BRL6 282 aaKnown RBP18.06■□□□□ 0.48
VPS53-211ENST00000571805 OTORQ9NRC9 128 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 ONECUT1Q9UBC0 465 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 PTPRQQ9UMZ3 2332 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 PLGLAQ15195 96 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 MMDQ15546 238 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 GTSF1Q8WW33 167 aa18.06■□□□□ 0.48
VPS53-211ENST00000571805 TCAPO15273 167 aa18.05■□□□□ 0.48
VPS53-211ENST00000571805 LIPFP07098 398 aa18.05■□□□□ 0.48
VPS53-211ENST00000571805 RASL11BQ9BPW5 248 aa18.05■□□□□ 0.48
VPS53-211ENST00000571805 A6NNC1 897 aa18.05■□□□□ 0.48
VPS53-211ENST00000571805 A8MWL6 223 aa18.05■□□□□ 0.48
VPS53-211ENST00000571805 K7EIM0 57 aa18.04■□□□□ 0.48
VPS53-211ENST00000571805 P01737 135 aa18.04■□□□□ 0.48
VPS53-211ENST00000571805 NTF3P20783 257 aa18.04■□□□□ 0.48
VPS53-211ENST00000571805 TPRP12270 2363 aaKnown RBP18.04■□□□□ 0.48
VPS53-211ENST00000571805 ANKHD1Q8IWZ3 2542 aaKnown RBP18.04■□□□□ 0.48
VPS53-211ENST00000571805 M0QZK8 103 aa18.03■□□□□ 0.48
VPS53-211ENST00000571805 CNIH1O95406 144 aa18.03■□□□□ 0.48
VPS53-211ENST00000571805 IGLV2-11P01706 119 aa18.03■□□□□ 0.48
VPS53-211ENST00000571805 HBBP68871 147 aa18.03■□□□□ 0.48
VPS53-211ENST00000571805 RBM14Q96PK6 669 aaKnown RBP18.03■□□□□ 0.48
VPS53-211ENST00000571805 HOXB4P17483 251 aaPredicted RBP18.03■□□□□ 0.48
VPS53-211ENST00000571805 Q86TA4 180 aa18.03■□□□□ 0.48
VPS53-211ENST00000571805 EXOC3-AS1Q8N2X6 119 aa18.03■□□□□ 0.48
VPS53-211ENST00000571805 TRAV8-1A0A0A6YYK1 113 aa18.02■□□□□ 0.48
VPS53-211ENST00000571805 LY6HO94772 140 aa18.02■□□□□ 0.48
VPS53-211ENST00000571805 OR11H6Q8NGC7 330 aa18.02■□□□□ 0.48
VPS53-211ENST00000571805 OR2D3Q8NGH3 330 aa18.02■□□□□ 0.48
VPS53-211ENST00000571805 CFHR4Q92496 578 aa18.02■□□□□ 0.48
VPS53-211ENST00000571805 BORCS7Q96B45 105 aa18.02■□□□□ 0.48
VPS53-211ENST00000571805 NPIPB6E9PJ23 425 aa18.02■□□□□ 0.47
VPS53-211ENST00000571805 HTR1DP28221 377 aa18.02■□□□□ 0.47
VPS53-211ENST00000571805 GFRA4Q9GZZ7 299 aa18.02■□□□□ 0.47
VPS53-211ENST00000571805 ARF6P62330 175 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 SPATA45Q537H7 98 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 PRR31Q5SQ13 230 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 DPM3Q9P2X0 92 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 SOX21Q9Y651 276 aaPredicted RBP18.01■□□□□ 0.47
VPS53-211ENST00000571805 ARHGAP32A7KAX9 2087 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 ABCA4P78363 2273 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 HSBP1O75506 76 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 CDSNQ15517 529 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 DAZAP1Q96EP5 407 aaKnown RBP18.01■□□□□ 0.47
VPS53-211ENST00000571805 URB1-AS1Q96HZ7 61 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 PGLYRP4Q96LB8 373 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 SHANK2-AS3Q9BTD1 123 aa18.01■□□□□ 0.47
VPS53-211ENST00000571805 NBR2O15453 112 aa18■□□□□ 0.47
VPS53-211ENST00000571805 GOLT1AQ6ZVE7 132 aa18■□□□□ 0.47
VPS53-211ENST00000571805 Q71RC1 249 aaPredicted RBP18■□□□□ 0.47
VPS53-211ENST00000571805 CIARTQ8N365 385 aaPredicted RBP18■□□□□ 0.47
VPS53-211ENST00000571805 IGFBPL1Q8WX77 278 aa18■□□□□ 0.47
VPS53-211ENST00000571805 HILPDAQ9Y5L2 63 aa18■□□□□ 0.47
VPS53-211ENST00000571805 NPBQ8NG41 125 aa17.99■□□□□ 0.47
VPS53-211ENST00000571805 ZNF785A8K8V0 405 aa17.99■□□□□ 0.47
VPS53-211ENST00000571805 CCL21O00585 134 aa17.99■□□□□ 0.47
VPS53-211ENST00000571805 NDUFA3O95167 84 aa17.99■□□□□ 0.47
VPS53-211ENST00000571805 RBPMS2Q6ZRY4 209 aaKnown RBP17.99■□□□□ 0.47
VPS53-211ENST00000571805 C17orf77Q96MU5 243 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms