RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 TIMM9Q9Y5J7 89 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 IGHV3-49A0A0A0MS15 119 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 A6NJY4 79 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 A8MWP6 167 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 K7EMT4 169 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 COX7A2P2O60397 106 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 HYPMO75409 117 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 SPP1P10451 314 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 EDN2P20800 178 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 ELLP55199 621 aaPredicted RBP7.32□□□□□ -1.24
CUX1-216ENST00000558469 PLP1P60201 277 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 SERF2P84101 59 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 GCSAMLQ5JQS6 135 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 PXDC1Q5TGL8 231 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 PATE2Q6UY27 113 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 BAP18Q8IXM2 172 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 OR2G3Q8NGZ4 309 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 STOML3Q8TAV4 291 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 ST8SIA2Q92186 375 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 METTL26Q96S19 204 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 DNAJC4Q9NNZ3 241 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 PEMTQ9UBM1 199 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 HIGD1AQ9Y241 93 aa7.32□□□□□ -1.24
CUX1-216ENST00000558469 IGHV3OR16-13A0A075B7E8 117 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 ELOA3CA0A087WX78 387 aaPredicted RBP7.31□□□□□ -1.24
CUX1-216ENST00000558469 IGHV3-74A0A0B4J1X5 117 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 IGHV3-66A0A0C4DH42 116 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 IGHV7-4-1A0A0J9YVY3 117 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 TMEM213A2RRL7 107 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 C2orf70A6NJV1 201 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 APOHP02749 345 aaPredicted RBP7.31□□□□□ -1.24
CUX1-216ENST00000558469 CD33P20138 364 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 CBLN1P23435 193 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 CRYBB3P26998 211 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 ANK2Q01484 3957 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 C10orf113Q5VZT2 155 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 OR1L4Q8NGR5 311 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 SPATA3Q8NHX4 192 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 TMEM37Q8WXS4 190 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 UHRF2Q96PU4 802 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 PFDN5Q99471 154 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 ELOVL1Q9BW60 279 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 VSIRQ9H7M9 311 aa7.31□□□□□ -1.24
CUX1-216ENST00000558469 MRPL27Q9P0M9 148 aaKnown RBP7.31□□□□□ -1.24
CUX1-216ENST00000558469 CSN3P07498 182 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 SEC11BP0C7V7 166 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 FOLR2P14207 255 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 RAB2AP61019 212 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 ACOT6Q3I5F7 207 aaPredicted RBP7.3□□□□□ -1.24
CUX1-216ENST00000558469 IL34Q6ZMJ4 242 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 LINC00305Q7Z4B0 112 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 OR10G4Q8NGN3 311 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 OR10G9Q8NGN4 311 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 OR10G7Q8NGN6 311 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 TMED6Q8WW62 240 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 NARS2Q96I59 477 aaKnown RBP7.3□□□□□ -1.24
CUX1-216ENST00000558469 SLC25A39Q9BZJ4 359 aaPredicted RBP7.3□□□□□ -1.24
CUX1-216ENST00000558469 SMPXQ9UHP9 88 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 PFDN2Q9UHV9 154 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 SELENOKQ9Y6D0 94 aa7.3□□□□□ -1.24
CUX1-216ENST00000558469 TRRAPQ9Y4A5 3859 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 PKD1L1Q8TDX9 2849 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 A0A1W2PS18 150 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 ZNF98A6NK75 572 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 SEC14L6B5MCN3 397 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 H3BRN7 92 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 CHEK1O14757 476 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 SAP30O75446 220 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 MBP02144 154 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 C8orf88P0DMB2 117 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 M6PRP20645 277 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 S100A7P31151 101 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 TMEM41BQ5BJD5 291 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 AKR1C8PQ5T2L2 129 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 FAM78BQ5VT40 261 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 MORN5Q5VZ52 161 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 LEMD1Q68G75 181 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 EIF5AL1Q6IS14 154 aaKnown RBP7.29□□□□□ -1.24
CUX1-216ENST00000558469 ADAMTSL5Q6ZMM2 481 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 S100A7AQ86SG5 101 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 GATAD1Q8WUU5 269 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 MARC2Q969Z3 335 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 RHPN1-AS1Q9BWJ2 59 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 SCRT1Q9BWW7 348 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 SLC25A22Q9H936 323 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 SEPSECSQ9HD40 501 aaKnown RBP7.29□□□□□ -1.24
CUX1-216ENST00000558469 U3KQE9 123 aa7.29□□□□□ -1.24
CUX1-216ENST00000558469 TRAV5A0A0B4J249 113 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 A0A1W2PPV4 95 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 BUB3O43684 328 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 RHOBP62745 196 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 SPATA31B1PQ5VZV4 182 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 FAM122CQ6P4D5 195 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 ALKAL2Q6UX46 152 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 RPP25LQ8N5L8 163 aaKnown RBP7.28□□□□□ -1.24
CUX1-216ENST00000558469 WFDC9Q8NEX5 89 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 GRAMD2BQ96HH9 432 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 RNF2Q99496 336 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 SHANK2-AS3Q9BTD1 123 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 TMEM231Q9H6L2 316 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms