RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	HEPN1	Q6WQI6	88 aa		11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	CACNG8	Q8WXS5	425 aa		11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	TMEM249	Q2WGJ8	235 aa		11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	TRBV7-1	A0A0A6YYK4	115 aa		11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	DUSP14	O95147	198 aa	Known RBP	11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	WT1	P19544	449 aa	Predicted RBP	11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	TMEM238L	A0A1B0GVL6	79 aa		11.79	□□□□□ -0.52
TRIO-222	ENST00000515144		A6NJY4	79 aa		11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	DNAL4	O96015	105 aa		11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	HLA-DQA1	P01909	254 aa		11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	DUX4L9	Q6RFH8	374 aa	Predicted RBP	11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	C18orf12	Q96KH6	178 aa		11.79	□□□□□ -0.52
TRIO-222	ENST00000515144	SSBP4	Q9BWG4	385 aa	Predicted RBP	11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	PLSCR2	Q9NRY7	297 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	PEF1	Q9UBV8	284 aa	Known RBP	11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	CD8A	P01732	235 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	PIP4P1	Q86T03	277 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144		A0A1B0GUT8	65 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	SRRM4	A7MD48	611 aa	Known RBP	11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	TMEM50A	O95807	157 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	IGHG3	P01860	377 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	PSG1	P11464	419 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	C5orf64	Q2M2E5	130 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	TRAV21	A0A0B4J279	112 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144		A0A087WX48	190 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	FABP5P3	A8MUU1	101 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	COX6C	P09669	75 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	TMEM136	Q6ZRR5	245 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	DTX2	Q86UW9	622 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	FAM89B	Q8N5H3	189 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	REG4	Q9BYZ8	158 aa		11.78	□□□□□ -0.52
TRIO-222	ENST00000515144	PNRC2	Q9NPJ4	139 aa	Known RBP	11.78	□□□□□ -0.52
TRIO-222	ENST00000515144		H0YJW9	148 aa		11.77	□□□□□ -0.52
TRIO-222	ENST00000515144	DMRTA1	Q5VZB9	504 aa		11.77	□□□□□ -0.52
TRIO-222	ENST00000515144	PRADC1	Q9BSG0	188 aa		11.77	□□□□□ -0.52
TRIO-222	ENST00000515144	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	11.77	□□□□□ -0.53
TRIO-222	ENST00000515144	RPP21	Q9H633	154 aa	Known RBP	11.77	□□□□□ -0.53
TRIO-222	ENST00000515144	ZNF362	Q5T0B9	420 aa	Predicted RBP	11.77	□□□□□ -0.53
TRIO-222	ENST00000515144	CA1	P00915	261 aa	Predicted RBP	11.77	□□□□□ -0.53
TRIO-222	ENST00000515144	PMCHL1	Q16048	86 aa		11.77	□□□□□ -0.53
TRIO-222	ENST00000515144	PVRIG	Q6DKI7	326 aa		11.77	□□□□□ -0.53
TRIO-222	ENST00000515144	CDX1	P47902	265 aa	Predicted RBP	11.77	□□□□□ -0.53
TRIO-222	ENST00000515144	ZNF506	Q5JVG8	444 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	FAM19A2	Q8N3H0	131 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	PRDM13	Q9H4Q3	707 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	OTOR	Q9NRC9	128 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	IGKV1-16	P04430	117 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	PRCD	Q00LT1	54 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	ST20	Q9HBF5	79 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	SPG11	Q96JI7	2443 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	PTPRS	Q13332	1948 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	TXNDC17	Q9BRA2	123 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	GGACT	Q9BVM4	153 aa		11.76	□□□□□ -0.53
TRIO-222	ENST00000515144	TMEM144	Q7Z5S9	345 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	PHLDA1	Q8WV24	401 aa	Predicted RBP	11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	EXPH5	Q8NEV8	1989 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	TRBV7-9	A0A0J9YWB2	115 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	WISP1	O95388	367 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144		Q8TAT8	98 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	VCX2	Q9H322	139 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	NR2C2AP	Q86WQ0	139 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	ST6GALNAC6	Q969X2	333 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	SEPSECS	Q9HD40	501 aa	Known RBP	11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	XCL2	Q9UBD3	114 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	CXorf65	A6NEN9	183 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	LINC00477	Q96M19	166 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	FOLR2	P14207	255 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	CCL1	P22362	96 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	TNFRSF14	Q92956	283 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	SIGLEC9	Q9Y336	463 aa		11.75	□□□□□ -0.53
TRIO-222	ENST00000515144	PGPEP1L	A6NFU8	196 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144		G3V318	75 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	ZNF414	Q96IQ9	312 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	TCF23	Q7RTU1	214 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	EFNB3	Q15768	340 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	GLRX5	Q86SX6	157 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144		F5H768	121 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	NDUFS8	O00217	210 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	DEFB131A	P59861	70 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	MLANA	Q16655	118 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	SLC50A1	Q9BRV3	221 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	IGHV1-69D	A0A0B4J2H0	117 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	ATP6V0E1	O15342	81 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	IGHV1-69	P01742	117 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	ATP5I	P56385	69 aa	Predicted RBP	11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	OR1P1	Q8NH06	330 aa		11.74	□□□□□ -0.53
TRIO-222	ENST00000515144	IGHV3-16	A0A0C4DH30	117 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	ALPK3	Q96L96	1907 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	ERCC8	Q13216	396 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	LURAP1L	Q8IV03	231 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	LINC00862	A6NCI5	91 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	LINC00473	A8K010	186 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144		H3BRM9	83 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	RNF182	Q8N6D2	247 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	EPDR1	Q9UM22	224 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	PSG8	Q9UQ74	426 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	OVOL3	O00110	214 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	TNFSF13	O75888	250 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	CD28	P10747	220 aa		11.73	□□□□□ -0.53
TRIO-222	ENST00000515144	CKS1B	P61024	79 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 283.9 ms