RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SAMD5Q5TGI4 173 aa11.33□□□□□ -0.6
NUP54-213ENST00000513352 LCN12Q6JVE5 192 aa11.33□□□□□ -0.6
NUP54-213ENST00000513352 Q6ZRG5 221 aa11.33□□□□□ -0.6
NUP54-213ENST00000513352 HSD17B11Q8NBQ5 300 aa11.33□□□□□ -0.6
NUP54-213ENST00000513352 SLC39A9Q9NUM3 307 aa11.33□□□□□ -0.6
NUP54-213ENST00000513352 HIGD1AQ9Y241 93 aa11.33□□□□□ -0.6
NUP54-213ENST00000513352 MGAM2Q2M2H8 2515 aa11.33□□□□□ -0.6
NUP54-213ENST00000513352 IGKV3-7A0A075B6H7 116 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 A0A0D9SG52 128 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 PFDN1O60925 122 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 IGLV1-51P01701 117 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 CXCL2P19875 107 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 S100A7P31151 101 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 RPL29P47914 159 aaKnown RBP11.32□□□□□ -0.6
NUP54-213ENST00000513352 RPL11P62913 178 aaKnown RBP11.32□□□□□ -0.6
NUP54-213ENST00000513352 ZNF345Q14585 488 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 DEFB114Q30KQ6 69 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 RPL7L1Q6DKI1 246 aaKnown RBP11.32□□□□□ -0.6
NUP54-213ENST00000513352 RBPMS2Q6ZRY4 209 aaKnown RBP11.32□□□□□ -0.6
NUP54-213ENST00000513352 S100A7AQ86SG5 101 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 KCNRGQ8N5I3 272 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 RNF2Q99496 336 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 ARPC5LQ9BPX5 153 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 NEURL2Q9BR09 285 aa11.32□□□□□ -0.6
NUP54-213ENST00000513352 PARD6GQ9BYG4 376 aaPredicted RBP11.32□□□□□ -0.6
NUP54-213ENST00000513352 KANTRA0A1W2PQU2 76 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 TAAR5O14804 337 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 PRR20EP86478 221 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 PRR20CP86479 221 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 PRR20DP86480 221 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 PRR20BP86481 221 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 PRR20AP86496 221 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 GUCA2BQ16661 112 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 FFAR4Q5NUL3 377 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 PXDC1Q5TGL8 231 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 LAMTOR1Q6IAA8 161 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 TCF24Q7RTU0 167 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 TMEM61Q8N0U2 210 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 OR1L4Q8NGR5 311 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 HYLS1Q96M11 299 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 UHRF2Q96PU4 802 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 SLC25A22Q9H936 323 aa11.31□□□□□ -0.6
NUP54-213ENST00000513352 SORL1Q92673 2214 aa11.3□□□□□ -0.6
NUP54-213ENST00000513352 IZUMO1RA6ND01 250 aa11.3□□□□□ -0.6
NUP54-213ENST00000513352 PLP1P60201 277 aa11.3□□□□□ -0.6
NUP54-213ENST00000513352 C10orf113Q5VZT2 155 aa11.3□□□□□ -0.6
NUP54-213ENST00000513352 LEMD1Q68G75 181 aa11.3□□□□□ -0.6
NUP54-213ENST00000513352 TMUB2Q71RG4 321 aa11.3□□□□□ -0.6
NUP54-213ENST00000513352 OR2K2Q8NGT1 345 aa11.3□□□□□ -0.6
NUP54-213ENST00000513352 ARV1Q9H2C2 271 aa11.3□□□□□ -0.6
NUP54-213ENST00000513352 VSIRQ9H7M9 311 aa11.3□□□□□ -0.6
NUP54-213ENST00000513352 ZMAT5Q9UDW3 170 aaKnown RBP11.3□□□□□ -0.6
NUP54-213ENST00000513352 ELOA3CA0A087WX78 387 aaPredicted RBP11.29□□□□□ -0.6
NUP54-213ENST00000513352 WIPF1O43516 503 aa11.29□□□□□ -0.6
NUP54-213ENST00000513352 BCL2L11O43521 198 aa11.29□□□□□ -0.6
NUP54-213ENST00000513352 TFPI2P48307 235 aa11.29□□□□□ -0.6
NUP54-213ENST00000513352 OR8I2Q8N0Y5 310 aa11.29□□□□□ -0.6
NUP54-213ENST00000513352 GBGT1Q8N5D6 347 aa11.29□□□□□ -0.6
NUP54-213ENST00000513352 PFDN5Q99471 154 aa11.29□□□□□ -0.6
NUP54-213ENST00000513352 SCRT1Q9BWW7 348 aa11.29□□□□□ -0.6
NUP54-213ENST00000513352 ZNF471Q9BX82 626 aaPredicted RBP11.29□□□□□ -0.6
NUP54-213ENST00000513352 SLC25A39Q9BZJ4 359 aaPredicted RBP11.29□□□□□ -0.6
NUP54-213ENST00000513352 RFNGQ9Y644 331 aa11.29□□□□□ -0.6
NUP54-213ENST00000513352 U3KQE9 123 aa11.29□□□□□ -0.6
NUP54-213ENST00000513352 ZNF98A6NK75 572 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 H3BRN7 92 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 BUB3O43684 328 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 JTBO76095 146 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 GP9P14770 177 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 ATP6V0CP27449 155 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 BEAN1Q3B7T3 259 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 GCSAMLQ5JQS6 135 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 C16orf54Q6UWD8 224 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 PATE2Q6UY27 113 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 LINC00305Q7Z4B0 112 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 WFDC3Q8IUB2 231 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 STXBP6Q8NFX7 210 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 GLMPQ8WWB7 406 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 PRR25Q96S07 402 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 SHANK2-AS3Q9BTD1 123 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 SH3BGRL3Q9H299 93 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 DNAJC4Q9NNZ3 241 aa11.28□□□□□ -0.6
NUP54-213ENST00000513352 ZNF256Q9Y2P7 627 aaPredicted RBP11.28□□□□□ -0.6
NUP54-213ENST00000513352 TRAV25A0A0B4J276 109 aa11.27□□□□□ -0.61
NUP54-213ENST00000513352 HELTA6NFD8 242 aa11.27□□□□□ -0.61
NUP54-213ENST00000513352 DNASE2O00115 360 aaPredicted RBP11.27□□□□□ -0.61
NUP54-213ENST00000513352 CD5P06127 495 aa11.27□□□□□ -0.61
NUP54-213ENST00000513352 NKX2-5P52952 324 aaPredicted RBP11.27□□□□□ -0.61
NUP54-213ENST00000513352 KRTAP10-11P60412 298 aa11.27□□□□□ -0.61
NUP54-213ENST00000513352 SIGLEC15Q6ZMC9 328 aa11.27□□□□□ -0.61
NUP54-213ENST00000513352 TMEM37Q8WXS4 190 aa11.27□□□□□ -0.61
NUP54-213ENST00000513352 GNPNAT1Q96EK6 184 aaPredicted RBP11.27□□□□□ -0.61
NUP54-213ENST00000513352 CYTL1Q9NRR1 136 aa11.27□□□□□ -0.61
NUP54-213ENST00000513352 TIMM9Q9Y5J7 89 aa11.27□□□□□ -0.61
NUP54-213ENST00000513352 PRB2P02812 416 aaPredicted RBP11.26□□□□□ -0.61
NUP54-213ENST00000513352 GALR1P47211 349 aa11.26□□□□□ -0.61
NUP54-213ENST00000513352 PAFAH1B2P68402 229 aa11.26□□□□□ -0.61
NUP54-213ENST00000513352 EGFEM1PQ0D2K5 195 aa11.26□□□□□ -0.61
NUP54-213ENST00000513352 ACOT6Q3I5F7 207 aaPredicted RBP11.26□□□□□ -0.61
NUP54-213ENST00000513352 LGALSLQ3ZCW2 172 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms