RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 RPL29P47914 159 aaKnown RBP22.37■■□□□ 1.17
LIMCH1-211ENST00000509638 B2MP61769 119 aa22.37■■□□□ 1.17
LIMCH1-211ENST00000509638 ZNF709Q8N972 641 aa22.37■■□□□ 1.17
LIMCH1-211ENST00000509638 NEURL2Q9BR09 285 aa22.37■■□□□ 1.17
LIMCH1-211ENST00000509638 RSG1Q9BU20 258 aa22.37■■□□□ 1.17
LIMCH1-211ENST00000509638 U3KQE9 123 aa22.37■■□□□ 1.17
LIMCH1-211ENST00000509638 DNAH3Q8TD57 4116 aa22.36■■□□□ 1.17
LIMCH1-211ENST00000509638 PLP1P60201 277 aa22.36■■□□□ 1.17
LIMCH1-211ENST00000509638 RNF2Q99496 336 aa22.36■■□□□ 1.17
LIMCH1-211ENST00000509638 TMEM231Q9H6L2 316 aa22.36■■□□□ 1.17
LIMCH1-211ENST00000509638 A0A1W2PS18 150 aa22.35■■□□□ 1.17
LIMCH1-211ENST00000509638 CXCL2P19875 107 aa22.35■■□□□ 1.17
LIMCH1-211ENST00000509638 TMEM61Q8N0U2 210 aa22.35■■□□□ 1.17
LIMCH1-211ENST00000509638 KCNRGQ8N5I3 272 aa22.35■■□□□ 1.17
LIMCH1-211ENST00000509638 PPP1R14BQ96C90 147 aa22.35■■□□□ 1.17
LIMCH1-211ENST00000509638 KCNIP2Q9NS61 270 aa22.35■■□□□ 1.17
LIMCH1-211ENST00000509638 SLC39A9Q9NUM3 307 aa22.35■■□□□ 1.17
LIMCH1-211ENST00000509638 IZUMO1RA6ND01 250 aa22.34■■□□□ 1.17
LIMCH1-211ENST00000509638 HYPMO75409 117 aa22.34■■□□□ 1.17
LIMCH1-211ENST00000509638 OR5G3P0C626 314 aa22.34■■□□□ 1.17
LIMCH1-211ENST00000509638 EGFEM1PQ0D2K5 195 aa22.34■■□□□ 1.17
LIMCH1-211ENST00000509638 LCN12Q6JVE5 192 aa22.34■■□□□ 1.17
LIMCH1-211ENST00000509638 OR2K2Q8NGT1 345 aa22.34■■□□□ 1.17
LIMCH1-211ENST00000509638 C17orf112F2Z3M2 114 aa22.33■■□□□ 1.17
LIMCH1-211ENST00000509638 BEAN1Q3B7T3 259 aa22.33■■□□□ 1.17
LIMCH1-211ENST00000509638 PXDC1Q5TGL8 231 aa22.33■■□□□ 1.17
LIMCH1-211ENST00000509638 RPL7L1Q6DKI1 246 aaKnown RBP22.33■■□□□ 1.17
LIMCH1-211ENST00000509638 GRAMD2BQ96HH9 432 aa22.33■■□□□ 1.17
LIMCH1-211ENST00000509638 PFDN2Q9UHV9 154 aa22.33■■□□□ 1.17
LIMCH1-211ENST00000509638 HIGD1AQ9Y241 93 aa22.33■■□□□ 1.17
LIMCH1-211ENST00000509638 COX7A2P2O60397 106 aa22.33■■□□□ 1.16
LIMCH1-211ENST00000509638 ZFP69Q49AA0 526 aa22.33■■□□□ 1.16
LIMCH1-211ENST00000509638 Q6ZRG5 221 aa22.33■■□□□ 1.16
LIMCH1-211ENST00000509638 HSD17B11Q8NBQ5 300 aa22.33■■□□□ 1.16
LIMCH1-211ENST00000509638 UHRF2Q96PU4 802 aa22.33■■□□□ 1.16
LIMCH1-211ENST00000509638 BUB3O43684 328 aa22.32■■□□□ 1.16
LIMCH1-211ENST00000509638 KRTAP10-11P60412 298 aa22.32■■□□□ 1.16
LIMCH1-211ENST00000509638 KPRPQ5T749 579 aaPredicted RBP22.32■■□□□ 1.16
LIMCH1-211ENST00000509638 ARV1Q9H2C2 271 aa22.32■■□□□ 1.16
LIMCH1-211ENST00000509638 BORCS7-ASMTA0A0B4J1R7 106 aa22.31■■□□□ 1.16
LIMCH1-211ENST00000509638 A0A0D9SG52 128 aa22.31■■□□□ 1.16
LIMCH1-211ENST00000509638 TAAR5O14804 337 aa22.31■■□□□ 1.16
LIMCH1-211ENST00000509638 PATE2Q6UY27 113 aa22.31■■□□□ 1.16
LIMCH1-211ENST00000509638 HYLS1Q96M11 299 aa22.31■■□□□ 1.16
LIMCH1-211ENST00000509638 C16orf54Q6UWD8 224 aa22.3■■□□□ 1.16
LIMCH1-211ENST00000509638 RBPMS2Q6ZRY4 209 aaKnown RBP22.3■■□□□ 1.16
LIMCH1-211ENST00000509638 TCF24Q7RTU0 167 aa22.3■■□□□ 1.16
LIMCH1-211ENST00000509638 GLMPQ8WWB7 406 aa22.3■■□□□ 1.16
LIMCH1-211ENST00000509638 ARPC5LQ9BPX5 153 aa22.3■■□□□ 1.16
LIMCH1-211ENST00000509638 SCRT1Q9BWW7 348 aa22.3■■□□□ 1.16
LIMCH1-211ENST00000509638 SLC25A39Q9BZJ4 359 aaPredicted RBP22.3■■□□□ 1.16
LIMCH1-211ENST00000509638 H3BRN7 92 aa22.29■■□□□ 1.16
LIMCH1-211ENST00000509638 LAMTOR1Q6IAA8 161 aa22.29■■□□□ 1.16
LIMCH1-211ENST00000509638 TMEM37Q8WXS4 190 aa22.29■■□□□ 1.16
LIMCH1-211ENST00000509638 RFNGQ9Y644 331 aa22.29■■□□□ 1.16
LIMCH1-211ENST00000509638 PFDN5Q99471 154 aa22.29■■□□□ 1.16
LIMCH1-211ENST00000509638 SHANK2-AS3Q9BTD1 123 aa22.29■■□□□ 1.16
LIMCH1-211ENST00000509638 SLC25A22Q9H936 323 aa22.29■■□□□ 1.16
LIMCH1-211ENST00000509638 ZNF256Q9Y2P7 627 aaPredicted RBP22.29■■□□□ 1.16
LIMCH1-211ENST00000509638 ELOA3CA0A087WX78 387 aaPredicted RBP22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 BCL2L11O43521 198 aa22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 S100A7P31151 101 aa22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 GUCA2BQ16661 112 aa22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 GCSAMLQ5JQS6 135 aa22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 C10orf113Q5VZT2 155 aa22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 FAM90A2PQ658T7 463 aa22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 LEMD1Q68G75 181 aa22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 OR1L4Q8NGR5 311 aa22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 CYTL1Q9NRR1 136 aa22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 ZMAT5Q9UDW3 170 aaKnown RBP22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 MEGF8Q7Z7M0 2845 aa22.28■■□□□ 1.16
LIMCH1-211ENST00000509638 IGKV3-7A0A075B6H7 116 aa22.27■■□□□ 1.16
LIMCH1-211ENST00000509638 TRAV25A0A0B4J276 109 aa22.27■■□□□ 1.16
LIMCH1-211ENST00000509638 KANTRA0A1W2PQU2 76 aa22.27■■□□□ 1.16
LIMCH1-211ENST00000509638 ZNF98A6NK75 572 aa22.27■■□□□ 1.16
LIMCH1-211ENST00000509638 PFDN1O60925 122 aa22.27■■□□□ 1.16
LIMCH1-211ENST00000509638 FFAR4Q5NUL3 377 aa22.27■■□□□ 1.16
LIMCH1-211ENST00000509638 LINC00305Q7Z4B0 112 aa22.27■■□□□ 1.16
LIMCH1-211ENST00000509638 S100A7AQ86SG5 101 aa22.27■■□□□ 1.16
LIMCH1-211ENST00000509638 TIMM9Q9Y5J7 89 aa22.27■■□□□ 1.16
LIMCH1-211ENST00000509638 TSPAN4O14817 238 aa22.26■■□□□ 1.15
LIMCH1-211ENST00000509638 JTBO76095 146 aa22.26■■□□□ 1.15
LIMCH1-211ENST00000509638 ATP6V0CP27449 155 aa22.26■■□□□ 1.15
LIMCH1-211ENST00000509638 RPL11P62913 178 aaKnown RBP22.26■■□□□ 1.15
LIMCH1-211ENST00000509638 C1orf194Q5T5A4 169 aa22.26■■□□□ 1.15
LIMCH1-211ENST00000509638 TMUB2Q71RG4 321 aa22.26■■□□□ 1.15
LIMCH1-211ENST00000509638 DNAJC4Q9NNZ3 241 aa22.26■■□□□ 1.15
LIMCH1-211ENST00000509638 CD5P06127 495 aa22.25■■□□□ 1.15
LIMCH1-211ENST00000509638 GP9P14770 177 aa22.25■■□□□ 1.15
LIMCH1-211ENST00000509638 SIGLEC15Q6ZMC9 328 aa22.25■■□□□ 1.15
LIMCH1-211ENST00000509638 SH3BGRL3Q9H299 93 aa22.25■■□□□ 1.15
LIMCH1-211ENST00000509638 HELTA6NFD8 242 aa22.25■■□□□ 1.15
LIMCH1-211ENST00000509638 LGALSLQ3ZCW2 172 aaPredicted RBP22.25■■□□□ 1.15
LIMCH1-211ENST00000509638 OR8I2Q8N0Y5 310 aa22.25■■□□□ 1.15
LIMCH1-211ENST00000509638 PRR25Q96S07 402 aa22.25■■□□□ 1.15
LIMCH1-211ENST00000509638 ZNF785A8K8V0 405 aa22.24■■□□□ 1.15
LIMCH1-211ENST00000509638 GATAD1Q8WUU5 269 aa22.24■■□□□ 1.15
LIMCH1-211ENST00000509638 SPAG8Q99932 426 aaPredicted RBP22.24■■□□□ 1.15
LIMCH1-211ENST00000509638 PSMG3Q9BT73 122 aaPredicted RBP22.24■■□□□ 1.15
LIMCH1-211ENST00000509638 SLC25A32Q9H2D1 315 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 129.6 ms