RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 PCNX1Q96RV3 2341 aa9.65□□□□□ -0.86
PTPRF-212ENST00000477970 IGHV2-70DA0A0C4DH43 119 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 PGPA6NDG6 321 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 SNURFLB1AK76 121 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 RD3LP0DJH9 198 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 FCGR2BP31994 310 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-212ENST00000477970 UBE2G1P62253 170 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 ZNF600Q6ZNG1 722 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 TP53TG3Q9ULZ0 132 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 POLR3KQ9Y2Y1 108 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-212ENST00000477970 HILPDAQ9Y5L2 63 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 ZNF705GA8MUZ8 300 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-212ENST00000477970 GATCO43716 136 aaKnown RBP9.64□□□□□ -0.87
PTPRF-212ENST00000477970 TCRAP04437 139 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 CRISP2P16562 243 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 IER3P46695 156 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 RANP62826 216 aaKnown RBP9.64□□□□□ -0.87
PTPRF-212ENST00000477970 ASPHD1Q5U4P2 390 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 ATP5L2Q7Z4Y8 100 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 Q9H3A6 140 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 ZFP36P26651 326 aaKnown RBP9.64□□□□□ -0.87
PTPRF-212ENST00000477970 TSKUQ8WUA8 353 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 ARPC1AQ92747 370 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 LINC00479Q96M42 142 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 PRSS22Q9GZN4 317 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 ZMAT5Q9UDW3 170 aaKnown RBP9.64□□□□□ -0.87
PTPRF-212ENST00000477970 NAV3Q8IVL0 2385 aa9.64□□□□□ -0.87
PTPRF-212ENST00000477970 RP1L1Q8IWN7 2480 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-212ENST00000477970 UBE2E1P51965 193 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 NUDT10Q8NFP7 164 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 NUDT11Q96G61 164 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 NAT8BQ9UHF3 227 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 OVOL3O00110 214 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 APELAP0DMC3 54 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 LYZP61626 148 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 CMTM2Q8TAZ6 248 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 FANCD2OSQ96PS1 177 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 GFRA4Q9GZZ7 299 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 SOX21Q9Y651 276 aaPredicted RBP9.63□□□□□ -0.87
PTPRF-212ENST00000477970 RELNP78509 3460 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 ASH1LQ9NR48 2969 aaKnown RBP9.63□□□□□ -0.87
PTPRF-212ENST00000477970 PKDREJQ9NTG1 2253 aa9.63□□□□□ -0.87
PTPRF-212ENST00000477970 C19orf71A6NCJ1 209 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 LINC00310P59036 64 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 RAB4BP61018 213 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 USF2Q15853 346 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-212ENST00000477970 ARL6IP6Q8N6S5 226 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 ZNF491Q8N8L2 437 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 TXN2Q99757 166 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 ZNF586Q9NXT0 402 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 FAM231BA6NCW3 169 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 MRPS12O15235 138 aaKnown RBP9.62□□□□□ -0.87
PTPRF-212ENST00000477970 IGLC2P0DOY2 106 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 GNG5P63218 68 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 IQCJQ1A5X6 159 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 TMEM256Q8N2U0 113 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 IGHV3-21A0A0B4J1V1 117 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 NPIPB6E9PJ23 425 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 TSTD3H0UI37 97 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 MFAP4P55083 255 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 TPPP2P59282 170 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 BPIFA4PQ86YQ2 179 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 DYNAPQ8N1N2 210 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 BLNKQ8WV28 456 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 NOL4LQ96MY1 436 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-212ENST00000477970 GSX1Q9H4S2 264 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-212ENST00000477970 C1RLQ9NZP8 487 aa9.62□□□□□ -0.87
PTPRF-212ENST00000477970 DOPEY2Q9Y3R5 2298 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 HLA-DRB1P01911 266 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 PDE6HQ13956 83 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 C16orf54Q6UWD8 224 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 RNF125Q96EQ8 232 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 AJUBAQ96IF1 538 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 THYN1Q9P016 225 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 NBASA2RRP1 2371 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 TRBV19A0A075B6N1 114 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 CDKN1AP38936 164 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 TMEM75Q8N9X5 138 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 ANKHD1Q8IWZ3 2542 aaKnown RBP9.61□□□□□ -0.87
PTPRF-212ENST00000477970 TRAV34A0A0B4J273 112 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 SCGB2A1O75556 95 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 LMO4P61968 165 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 FBLN7Q53RD9 439 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 OR4B1Q8NGF8 309 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 SERTAD4Q9NUC0 356 aa9.61□□□□□ -0.87
PTPRF-212ENST00000477970 A0A1B0GXF2 115 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 F8W735 103 aaPredicted RBP9.6□□□□□ -0.87
PTPRF-212ENST00000477970 NUPR1O60356 82 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 OR2J3O76001 311 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 FAM106CPP0CH98 169 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 HES1Q14469 280 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 Q86TA4 180 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 FAM168AQ92567 244 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 TBX15Q96SF7 602 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 RPP21Q9H633 154 aaKnown RBP9.6□□□□□ -0.87
PTPRF-212ENST00000477970 UBTD1Q9HAC8 227 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 LPAR2Q9HBW0 351 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 ZNF331Q9NQX6 463 aaPredicted RBP9.6□□□□□ -0.87
PTPRF-212ENST00000477970 ADGRG4Q8IZF6 3080 aa9.6□□□□□ -0.87
PTPRF-212ENST00000477970 A1L4Q6 167 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms