RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SMCO1Q147U7 214 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 PYDC2Q56P42 97 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 NMSQ5H8A3 153 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 Q6ZNX1 250 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 NOXA1Q86UR1 476 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 LGI3Q8N145 548 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 TOMM5Q8N4H5 51 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 OR1S2Q8NGQ3 325 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 RNF183Q96D59 192 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 MS4A6AQ9H2W1 248 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 MAP6D1Q9H9H5 199 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 MRPL36Q9P0J6 103 aaKnown RBP5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 SHPKQ9UHJ6 478 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 AGRNO00468 2067 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 A0A0J9YWU9 116 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 IFNA10P01566 189 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 IGKV1-17P01599 117 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 IGLC1P0CG04 106 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 CRYBB3P26998 211 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 OR10J1P30954 320 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 P2RY1P47900 373 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 EIF2B2P49770 351 aaKnown RBP5□□□□□ -1.61
CCDC88A-213ENST00000476903 RND2P52198 227 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 YPEL3P61236 119 aaPredicted RBP5□□□□□ -1.61
CCDC88A-213ENST00000476903 SUPT4H1P63272 117 aaKnown RBP5□□□□□ -1.61
CCDC88A-213ENST00000476903 S100A12P80511 92 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 TNFRSF9Q07011 255 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 KLF9Q13886 244 aaPredicted RBP5□□□□□ -1.61
CCDC88A-213ENST00000476903 TIGITQ495A1 244 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 PRSS54Q6PEW0 395 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 TMED4Q7Z7H5 227 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 LYG2Q86SG7 212 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 TMEM217Q8N7C4 229 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 Q8WTZ3 238 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 DEDD2Q8WXF8 326 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 GRAMD2BQ96HH9 432 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 CSTL1Q9H114 145 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 HSPB7Q9UBY9 170 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 RABAC1Q9UI14 185 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 U3KQ87 197 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 V9GYH0 126 aa5□□□□□ -1.61
CCDC88A-213ENST00000476903 DYNC2H1Q8NCM8 4307 aaKnown RBP4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 LYSTQ99698 3801 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 DUXBA0A1W2PPF3 345 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 CXorf65A6NEN9 183 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 NUPR2A6NF83 97 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 MPTX1A8MV57 137 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 S100A1P23297 94 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 ATP5IP56385 69 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 DEFB131AP59861 70 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 ZNF79Q15937 498 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 TMEM128Q5BJH2 165 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 LYZL2Q7Z4W2 148 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 STXBP6Q8NFX7 210 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 OR1S1Q8NH92 325 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 DTD1Q8TEA8 209 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 GATAD1Q8WUU5 269 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 TMEM170AQ8WVE7 144 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 NPIPB3Q92617 1050 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 SLC25A21Q9BQT8 299 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 RBKSQ9H477 322 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 SACSQ9NZJ4 4579 aa4.99□□□□□ -1.61
CCDC88A-213ENST00000476903 HYDINQ4G0P3 5121 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 HELTA6NFD8 242 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 B5MCH6 92 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 K7EQG2 157 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 ZNF701M0R085 212 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 TOMM40O96008 361 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 CA1P00915 261 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 IFNA4P05014 189 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 IL4P05112 153 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 RD3LP0DJH9 198 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 SLC25A6P12236 298 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 AP2S1P53680 142 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 PMS2P11Q13670 270 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 RBMS2Q15434 407 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 SPANXN2Q5MJ10 180 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 LEMD1Q68G75 181 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 CCDC190Q86UF4 302 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 STHQ8IWL8 128 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 FAM24BQ8N5W8 94 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 ACY3Q96HD9 319 aa4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 RBM38Q9H0Z9 239 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-213ENST00000476903 ZFP92A6NM28 416 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 FAM90A26D6RGX4 464 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 PITX3O75364 302 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 MED6O75586 246 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 SFT2D2O95562 160 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 FABP1P07148 127 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 ZNF688P0C7X2 276 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 GPX4P36969 197 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 INPP1P49441 399 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 RPP30P78346 268 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 EWSR1Q01844 656 aaKnown RBP eCLIP4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 DHRS2Q13268 280 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 USF2Q15853 346 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 TMEM41BQ5BJD5 291 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 CEMP1Q6PRD7 247 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 CENPSQ8N2Z9 138 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 LRTM2Q8N967 370 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms