RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SAV1Q9H4B6 383 aaPredicted RBP11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 PAIP2BQ9ULR5 123 aaKnown RBP11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 IGKV1OR2-108A0A075B7D4 117 aa11.92□□□□□ -0.5
CCDC28B-204ENST00000469003 SYNGR2O43760 224 aa11.92□□□□□ -0.5
CCDC28B-204ENST00000469003 ZNF705AQ6ZN79 300 aaPredicted RBP11.92□□□□□ -0.5
CCDC28B-204ENST00000469003 PPP1R14BQ96C90 147 aa11.92□□□□□ -0.5
CCDC28B-204ENST00000469003 CLUHP3Q96NS8 147 aa11.92□□□□□ -0.5
CCDC28B-204ENST00000469003 NEU1Q99519 415 aa11.92□□□□□ -0.5
CCDC28B-204ENST00000469003 PRSS46E5RG02 174 aa11.91□□□□□ -0.5
CCDC28B-204ENST00000469003 CFDP00746 253 aaPredicted RBP11.91□□□□□ -0.5
CCDC28B-204ENST00000469003 DEFB1P60022 68 aa11.91□□□□□ -0.5
CCDC28B-204ENST00000469003 GGNBP1Q5YKI7 109 aa11.91□□□□□ -0.5
CCDC28B-204ENST00000469003 CCDC190Q86UF4 302 aa11.91□□□□□ -0.5
CCDC28B-204ENST00000469003 OR8I2Q8N0Y5 310 aa11.91□□□□□ -0.5
CCDC28B-204ENST00000469003 COQ8AQ8NI60 647 aa11.91□□□□□ -0.5
CCDC28B-204ENST00000469003 MAGT1Q9H0U3 335 aa11.91□□□□□ -0.5
CCDC28B-204ENST00000469003 DEFB131BA0A096LNP1 70 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 CCDC160A6NGH7 325 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 SMIM9A6NGZ8 99 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 ZNF705FA8MVS1 300 aaPredicted RBP11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 WRBO00258 174 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 ISLRO14498 428 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 IGKV3-20P01619 116 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 AMBPP02760 352 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 HOXB5P09067 269 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 ZNF705DP0CH99 300 aaPredicted RBP11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 ZNF705BP0CI00 300 aaPredicted RBP11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 FXYD7P58549 80 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 UBE2MP61081 183 aaKnown RBP11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 SAMD13Q5VXD3 122 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 SPATA31B1PQ5VZV4 182 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 ZNF767PQ75MW2 155 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 SLC45A2Q9UMX9 530 aa11.9□□□□□ -0.5
CCDC28B-204ENST00000469003 TMEM189A5PLL7 270 aa11.89□□□□□ -0.51
CCDC28B-204ENST00000469003 MEOX2P50222 304 aa11.89□□□□□ -0.51
CCDC28B-204ENST00000469003 PAX9P55771 341 aa11.89□□□□□ -0.51
CCDC28B-204ENST00000469003 ZNF709Q8N972 641 aa11.89□□□□□ -0.51
CCDC28B-204ENST00000469003 OR4B1Q8NGF8 309 aa11.89□□□□□ -0.51
CCDC28B-204ENST00000469003 GALR1P47211 349 aa11.88□□□□□ -0.51
CCDC28B-204ENST00000469003 SPANXN5Q5MJ07 72 aa11.88□□□□□ -0.51
CCDC28B-204ENST00000469003 EBLN2Q6P2I7 272 aa11.88□□□□□ -0.51
CCDC28B-204ENST00000469003 BPIFCQ8NFQ6 507 aa11.88□□□□□ -0.51
CCDC28B-204ENST00000469003 SLC25A32Q9H2D1 315 aa11.88□□□□□ -0.51
CCDC28B-204ENST00000469003 KIAA1109Q2LD37 5005 aa11.88□□□□□ -0.51
CCDC28B-204ENST00000469003 IGHV3OR16-12A0A075B7B8 117 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 A0A0J9YX75 114 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 ZNF98A6NK75 572 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 SPART-AS1P0CW21 52 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 PSG9Q00887 426 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 SPANXN2Q5MJ10 180 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 GSG1LQ6UXU4 331 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 C16orf92Q96LL3 132 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 SRRQ9GZT4 340 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 RBM38Q9H0Z9 239 aaKnown RBP11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 SLC25A22Q9H936 323 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 RPRMQ9NS64 109 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 STRAPQ9Y3F4 350 aaKnown RBP11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 RFNGQ9Y644 331 aa11.87□□□□□ -0.51
CCDC28B-204ENST00000469003 C9orf170A2RU37 121 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 F6UB75 175 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 H3BP45 60 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 GATA2P23769 480 aaPredicted RBP11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 S100A7P31151 101 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 ID3Q02535 119 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 AKR1C1Q04828 323 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 FAM78BQ5VT40 261 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 TMEM182Q6ZP80 229 aaPredicted RBP11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 OR4D5Q8NGN0 318 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 C20orf173Q96LM9 149 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 SLC35B3Q9H1N7 401 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 GOLT1BQ9Y3E0 138 aa11.86□□□□□ -0.51
CCDC28B-204ENST00000469003 TEX48A0A1B0GUV7 120 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 NAP1L6A6NFF2 107 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 ADAP1O75689 374 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 NDUFB6O95139 128 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 ORM2P19652 201 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 EMP1P54849 157 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 ACOT7LQ6ZUV0 252 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 TMEM144Q7Z5S9 345 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 OR1B1Q8NGR6 318 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 C17orf77Q96MU5 243 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 GPR82Q96P67 336 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 RSG1Q9BU20 258 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 NDUFAF3Q9BU61 184 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 TMEM147Q9BVK8 224 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 SCRT1Q9BWW7 348 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 DOK5Q9P104 306 aa11.85□□□□□ -0.51
CCDC28B-204ENST00000469003 A8MTW9 85 aa11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 ZNF701M0R085 212 aaPredicted RBP11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 P0DMU3 169 aa11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 FAM231AP0DMU4 169 aa11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 FAM231CP0DMU5 169 aa11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 INPP1P49441 399 aa11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 POLR2GP62487 172 aaKnown RBP eCLIP11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 C1orf158Q8N1D5 194 aa11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 PSENENQ9NZ42 101 aa11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 DKK2Q9UBU2 259 aa11.84□□□□□ -0.51
CCDC28B-204ENST00000469003 IFNA21P01568 189 aa11.83□□□□□ -0.52
CCDC28B-204ENST00000469003 HBE1P02100 147 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 906 ms