RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CHRDL1Q9BU40 450 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 MAP1AP78559 2803 aaPredicted RBP17.04■□□□□ 0.32
TRIM54-202ENST00000380075 SMIM27A0A1W2PRY6 76 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 NPIPB5A8MRT5 1133 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 K7EIM0 57 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 ADMP35318 185 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 RANP62826 216 aaKnown RBP17.04■□□□□ 0.32
TRIM54-202ENST00000380075 EBI3Q14213 229 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 ZNF562Q6V9R5 426 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 OR8I2Q8N0Y5 310 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 KLF12Q9Y4X4 402 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 SLC25A5P05141 298 aaKnown RBP17.03■□□□□ 0.32
TRIM54-202ENST00000380075 HOXB4P17483 251 aaPredicted RBP17.03■□□□□ 0.32
TRIM54-202ENST00000380075 JOSD1Q15040 202 aaPredicted RBP17.03■□□□□ 0.32
TRIM54-202ENST00000380075 C5orf17Q8NAS9 161 aa17.03■□□□□ 0.32
TRIM54-202ENST00000380075 SIRPDQ9H106 197 aa17.03■□□□□ 0.32
TRIM54-202ENST00000380075 TBL2Q9Y4P3 447 aaKnown RBP17.03■□□□□ 0.32
TRIM54-202ENST00000380075 CCDC168Q8NDH2 2452 aa17.03■□□□□ 0.32
TRIM54-202ENST00000380075 LYZP61626 148 aa17.02■□□□□ 0.32
TRIM54-202ENST00000380075 UBE2G1P62253 170 aa17.02■□□□□ 0.32
TRIM54-202ENST00000380075 CTAG1AP78358 180 aa17.02■□□□□ 0.32
TRIM54-202ENST00000380075 GBGT1Q8N5D6 347 aa17.02■□□□□ 0.32
TRIM54-202ENST00000380075 Q8N6K4 173 aa17.02■□□□□ 0.32
TRIM54-202ENST00000380075 MRPL18Q9H0U6 180 aaKnown RBP17.02■□□□□ 0.32
TRIM54-202ENST00000380075 MRPL27Q9P0M9 148 aaKnown RBP17.02■□□□□ 0.32
TRIM54-202ENST00000380075 TRAV30A0A087WSZ9 112 aa17.02■□□□□ 0.31
TRIM54-202ENST00000380075 PGPA6NDG6 321 aa17.02■□□□□ 0.31
TRIM54-202ENST00000380075 IGKV1-17P01599 117 aa17.02■□□□□ 0.31
TRIM54-202ENST00000380075 RD3LP0DJH9 198 aa17.02■□□□□ 0.31
TRIM54-202ENST00000380075 CBLN1P23435 193 aa17.02■□□□□ 0.31
TRIM54-202ENST00000380075 LRRC75A-AS1Q8N1F1 130 aa17.02■□□□□ 0.31
TRIM54-202ENST00000380075 BLNKQ8WV28 456 aa17.02■□□□□ 0.31
TRIM54-202ENST00000380075 ATG101Q9BSB4 218 aa17.02■□□□□ 0.31
TRIM54-202ENST00000380075 SLC25A39Q9BZJ4 359 aaPredicted RBP17.02■□□□□ 0.31
TRIM54-202ENST00000380075 RNF24Q9Y225 148 aa17.02■□□□□ 0.31
TRIM54-202ENST00000380075 ZNF705GA8MUZ8 300 aaPredicted RBP17.01■□□□□ 0.31
TRIM54-202ENST00000380075 ZFP36P26651 326 aaKnown RBP17.01■□□□□ 0.31
TRIM54-202ENST00000380075 S100A7AQ86SG5 101 aa17.01■□□□□ 0.31
TRIM54-202ENST00000380075 LINC00479Q96M42 142 aa17.01■□□□□ 0.31
TRIM54-202ENST00000380075 ZNF48Q96MX3 618 aaPredicted RBP17.01■□□□□ 0.31
TRIM54-202ENST00000380075 GSX1Q9H4S2 264 aaPredicted RBP17.01■□□□□ 0.31
TRIM54-202ENST00000380075 PLXNB1O43157 2135 aa17.01■□□□□ 0.31
TRIM54-202ENST00000380075 LINC00587B1AMM8 73 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 ARPC1AQ92747 370 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 TMEM68Q96MH6 324 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 RBM14Q96PK6 669 aaKnown RBP17■□□□□ 0.31
TRIM54-202ENST00000380075 TEX15Q9BXT5 2789 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 IGHV2-70DA0A0C4DH43 119 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 SNURFLB1AK76 121 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 TOMM40O96008 361 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 HIST1H1EP10412 219 aaKnown RBP17■□□□□ 0.31
TRIM54-202ENST00000380075 IER3P46695 156 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 ZNF600Q6ZNG1 722 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 FMC1Q96HJ9 113 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 SERTAD4Q9NUC0 356 aa17■□□□□ 0.31
TRIM54-202ENST00000380075 FOXC2Q99958 501 aa16.99■□□□□ 0.31
TRIM54-202ENST00000380075 OTORQ9NRC9 128 aa16.99■□□□□ 0.31
TRIM54-202ENST00000380075 A0A1W2PRD5 423 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 A0A1W2PRF3 423 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 A0A1W2PRM7 423 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 IZUMO1RA6ND01 250 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 GATCO43716 136 aaKnown RBP16.98■□□□□ 0.31
TRIM54-202ENST00000380075 RASL11AQ6T310 242 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 TTC9CQ8N5M4 171 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 GRAMD2BQ96HH9 432 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 GPR82Q96P67 336 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 Q9H3A6 140 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 TRAV34A0A0B4J273 112 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 GNG5P63218 68 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 KRTAP1-3Q8IUG1 177 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 SHANK2-AS3Q9BTD1 123 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 C1RLQ9NZP8 487 aa16.98■□□□□ 0.31
TRIM54-202ENST00000380075 IGLV11-55A0A075B6I3 123 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 AMY1AP04745 511 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 CRISP2P16562 243 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 CD24P25063 80 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 UBE2E1P51965 193 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 Q5PR19 223 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 PRDM13Q9H4Q3 707 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 TOX4O94842 621 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 HLA-DQA1P01909 254 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 CDPF1Q6NVV7 123 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 DYNAPQ8N1N2 210 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 NHLRC2Q8NBF2 726 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 FAM103A1Q9BTL3 118 aaKnown RBP16.97■□□□□ 0.31
TRIM54-202ENST00000380075 C7orf69Q9H7B7 122 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 THYN1Q9P016 225 aa16.97■□□□□ 0.31
TRIM54-202ENST00000380075 NCBP2LA6PVI3 153 aaKnown RBP16.96■□□□□ 0.31
TRIM54-202ENST00000380075 H3BRN7 92 aa16.96■□□□□ 0.31
TRIM54-202ENST00000380075 TCRAP04437 139 aa16.96■□□□□ 0.31
TRIM54-202ENST00000380075 ESDP10768 282 aa16.96■□□□□ 0.31
TRIM54-202ENST00000380075 TMEM11P17152 192 aa16.96■□□□□ 0.31
TRIM54-202ENST00000380075 MFAP4P55083 255 aa16.96■□□□□ 0.31
TRIM54-202ENST00000380075 Q0VG73 95 aa16.96■□□□□ 0.31
TRIM54-202ENST00000380075 LEMD1Q68G75 181 aa16.96■□□□□ 0.31
TRIM54-202ENST00000380075 BPIFA4PQ86YQ2 179 aa16.96■□□□□ 0.31
TRIM54-202ENST00000380075 PRRC2AP48634 2157 aaKnown RBP16.96■□□□□ 0.31
TRIM54-202ENST00000380075 OTOGQ6ZRI0 2925 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 FAM106CPP0CH98 169 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 GZMBP10144 247 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms