RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 RAB24Q969Q5 203 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 RNF125Q96EQ8 232 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 C19orf24Q9BVV8 132 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 SEC11CQ9BY50 192 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 A0A1W2PPV4 95 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 OR5G3P0C626 314 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 RELQ04864 619 aaPredicted RBP15.31■□□□□ 0.04
CLN3-205ENST00000359984 FAM78BQ5VT40 261 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 C10orf113Q5VZT2 155 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 SPATA31B1PQ5VZV4 182 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 TOMM20LQ6UXN7 152 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 C18orf65Q6ZTR6 163 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 C11orf44Q8N8P7 122 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 PFDN5Q99471 154 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 PBDC1Q9BVG4 233 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 ELOA3CA0A087WX78 387 aaPredicted RBP15.31■□□□□ 0.04
CLN3-205ENST00000359984 CTXND1A0A1B0GTU2 59 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 H2AFB1P0C5Y9 115 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 CDC34P49427 236 aaPredicted RBP15.31■□□□□ 0.04
CLN3-205ENST00000359984 RHOBP62745 196 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 USF2Q15853 346 aaPredicted RBP15.31■□□□□ 0.04
CLN3-205ENST00000359984 MBD3L1Q8WWY6 194 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 UHRF2Q96PU4 802 aa15.31■□□□□ 0.04
CLN3-205ENST00000359984 HMGB3O15347 200 aaKnown RBP15.3■□□□□ 0.04
CLN3-205ENST00000359984 KHDC1LQ5JSQ8 128 aa15.3■□□□□ 0.04
CLN3-205ENST00000359984 LCN15Q6UWW0 184 aa15.3■□□□□ 0.04
CLN3-205ENST00000359984 SFT2D1Q8WV19 159 aa15.3■□□□□ 0.04
CLN3-205ENST00000359984 ZFAND3Q9H8U3 227 aa15.3■□□□□ 0.04
CLN3-205ENST00000359984 MRPL27Q9P0M9 148 aaKnown RBP15.3■□□□□ 0.04
CLN3-205ENST00000359984 FUT9Q9Y231 359 aa15.3■□□□□ 0.04
CLN3-205ENST00000359984 IGHV3OR16-8A0A075B7F1 116 aa15.29■□□□□ 0.04
CLN3-205ENST00000359984 F8W036 122 aa15.29■□□□□ 0.04
CLN3-205ENST00000359984 GGCTO75223 188 aaKnown RBP15.29■□□□□ 0.04
CLN3-205ENST00000359984 BTN1A1Q13410 526 aa15.29■□□□□ 0.04
CLN3-205ENST00000359984 GUCA2BQ16661 112 aa15.29■□□□□ 0.04
CLN3-205ENST00000359984 MORN5Q5VZ52 161 aa15.29■□□□□ 0.04
CLN3-205ENST00000359984 MIR17HGQ75NE6 70 aa15.29■□□□□ 0.04
CLN3-205ENST00000359984 A0A1B0GV50 99 aa15.29■□□□□ 0.04
CLN3-205ENST00000359984 RNF2Q99496 336 aa15.29■□□□□ 0.04
CLN3-205ENST00000359984 HIGD1AQ9Y241 93 aa15.29■□□□□ 0.04
CLN3-205ENST00000359984 A0A1B0GUS0 222 aa15.28■□□□□ 0.04
CLN3-205ENST00000359984 MAP1LC3B2A6NCE7 125 aa15.28■□□□□ 0.04
CLN3-205ENST00000359984 FGF8P55075 233 aaPredicted RBP15.28■□□□□ 0.04
CLN3-205ENST00000359984 GUK1Q16774 197 aa15.28■□□□□ 0.04
CLN3-205ENST00000359984 LINC00305Q7Z4B0 112 aa15.28■□□□□ 0.04
CLN3-205ENST00000359984 SVBPQ8N300 66 aa15.28■□□□□ 0.04
CLN3-205ENST00000359984 C4orf3Q8WVX3 66 aa15.28■□□□□ 0.04
CLN3-205ENST00000359984 WFDC12Q8WWY7 111 aa15.28■□□□□ 0.04
CLN3-205ENST00000359984 CITED2Q99967 270 aaPredicted RBP15.28■□□□□ 0.04
CLN3-205ENST00000359984 MAP1LC3BQ9GZQ8 125 aa15.28■□□□□ 0.04
CLN3-205ENST00000359984 SFTA3P0C7M3 94 aa15.27■□□□□ 0.04
CLN3-205ENST00000359984 MRPL32Q9BYC8 188 aaKnown RBP15.27■□□□□ 0.04
CLN3-205ENST00000359984 NKX6-2Q9C056 277 aaPredicted RBP15.27■□□□□ 0.04
CLN3-205ENST00000359984 TMA7Q9Y2S6 64 aaKnown RBP15.27■□□□□ 0.04
CLN3-205ENST00000359984 IGHV4OR15-8A0A075B7B6 117 aa15.27■□□□□ 0.03
CLN3-205ENST00000359984 A0A087WW49 117 aa15.27■□□□□ 0.03
CLN3-205ENST00000359984 TRAV1-1A0A0B4J248 108 aa15.27■□□□□ 0.03
CLN3-205ENST00000359984 TRAV5A0A0B4J249 113 aa15.27■□□□□ 0.03
CLN3-205ENST00000359984 NDUFA4O00483 81 aa15.27■□□□□ 0.03
CLN3-205ENST00000359984 HSPB1P04792 205 aaKnown RBP15.27■□□□□ 0.03
CLN3-205ENST00000359984 KRTAP10-3P60369 221 aa15.27■□□□□ 0.03
CLN3-205ENST00000359984 CCL20P78556 96 aa15.27■□□□□ 0.03
CLN3-205ENST00000359984 SLC25A39Q9BZJ4 359 aaPredicted RBP15.27■□□□□ 0.03
CLN3-205ENST00000359984 DNASE2O00115 360 aaPredicted RBP15.26■□□□□ 0.03
CLN3-205ENST00000359984 STAG3L2P0CL84 134 aa15.26■□□□□ 0.03
CLN3-205ENST00000359984 STAG3L3P0CL85 134 aa15.26■□□□□ 0.03
CLN3-205ENST00000359984 DEFB136Q30KP8 78 aa15.26■□□□□ 0.03
CLN3-205ENST00000359984 UNQ9165/PRO28630Q6UXU0 137 aa15.26■□□□□ 0.03
CLN3-205ENST00000359984 KLHL30-AS1Q8NEE0 82 aa15.26■□□□□ 0.03
CLN3-205ENST00000359984 HBE1P02100 147 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 FOXL1Q12952 345 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 PEA15Q15121 130 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 PRIMA1Q86XR5 153 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 TECRQ9NZ01 308 aaKnown RBP15.25■□□□□ 0.03
CLN3-205ENST00000359984 RABAC1Q9UI14 185 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 TSSC4Q9Y5U2 329 aaPredicted RBP15.25■□□□□ 0.03
CLN3-205ENST00000359984 C8orf88P0DMB2 117 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 RPEL1Q2QD12 228 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 LEMD1Q68G75 181 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 GPHB5Q86YW7 130 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 FAM167A-AS1Q96KT0 104 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 SHANK2-AS3Q9BTD1 123 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 C20orf24Q9BUV8 137 aa15.25■□□□□ 0.03
CLN3-205ENST00000359984 A0A1W2PRX2 142 aa15.24■□□□□ 0.03
CLN3-205ENST00000359984 H3BRN7 92 aa15.24■□□□□ 0.03
CLN3-205ENST00000359984 ZNF207O43670 478 aaKnown RBP15.24■□□□□ 0.03
CLN3-205ENST00000359984 ARL14EPLP0DKL9 152 aa15.24■□□□□ 0.03
CLN3-205ENST00000359984 SLC25A2Q9BXI2 301 aa15.24■□□□□ 0.03
CLN3-205ENST00000359984 TAS2R45P59539 299 aa15.23■□□□□ 0.03
CLN3-205ENST00000359984 C8orf86Q6ZUL3 223 aa15.23■□□□□ 0.03
CLN3-205ENST00000359984 TMEM190Q8WZ59 177 aa15.23■□□□□ 0.03
CLN3-205ENST00000359984 TMPRSS5Q9H3S3 457 aa15.23■□□□□ 0.03
CLN3-205ENST00000359984 SMDT1Q9H4I9 107 aa15.23■□□□□ 0.03
CLN3-205ENST00000359984 PRELID1Q9Y255 219 aa15.23■□□□□ 0.03
CLN3-205ENST00000359984 ZNF320A2RRD8 509 aa15.23■□□□□ 0.03
CLN3-205ENST00000359984 FAM106AQ4KMX7 169 aa15.23■□□□□ 0.03
CLN3-205ENST00000359984 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.23■□□□□ 0.03
CLN3-205ENST00000359984 OR11H1Q8NG94 326 aa15.23■□□□□ 0.03
CLN3-205ENST00000359984 ZNF503Q96F45 646 aa15.23■□□□□ 0.03
CLN3-205ENST00000359984 ZNF98A6NK75 572 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms