RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 MSMBP08118 114 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 EFNB3Q15768 340 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 NABP1Q96AH0 204 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 IGKV1-27A0A075B6S5 117 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 CRYGSP22914 178 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 CTAG1AP78358 180 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 GAFA1Q96PS6 74 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 CST9LQ9H4G1 147 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 MBD3L4A6NDZ8 208 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-201ENST00000359947 MBD3L3A6NE82 208 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-201ENST00000359947 MBD3L5A6NJ08 208 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-201ENST00000359947 MBD3L2Q8NHZ7 208 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-201ENST00000359947 DMRTA1Q5VZB9 504 aa12.78□□□□□ -0.36
PTPRF-201ENST00000359947 ERVH48-1M5A8F1 160 aa12.78□□□□□ -0.36
PTPRF-201ENST00000359947 SRSF1Q07955 248 aaKnown RBP eCLIP12.78□□□□□ -0.36
PTPRF-201ENST00000359947 C5orf64Q2M2E5 130 aa12.78□□□□□ -0.36
PTPRF-201ENST00000359947 FNDC1Q4ZHG4 1894 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-201ENST00000359947 C5orf63A6NC05 138 aa12.78□□□□□ -0.36
PTPRF-201ENST00000359947 PRB1P04280 392 aa12.77□□□□□ -0.36
PTPRF-201ENST00000359947 A6NNC1 897 aa12.77□□□□□ -0.36
PTPRF-201ENST00000359947 ZNRD1Q9P1U0 126 aa12.77□□□□□ -0.36
PTPRF-201ENST00000359947 TRBV7-1A0A0A6YYK4 115 aa12.77□□□□□ -0.36
PTPRF-201ENST00000359947 CMC4P56277 68 aaPredicted RBP12.77□□□□□ -0.36
PTPRF-201ENST00000359947 Q6AWC8 147 aa12.77□□□□□ -0.36
PTPRF-201ENST00000359947 SLC25A48Q6ZT89 311 aaKnown RBP12.77□□□□□ -0.36
PTPRF-201ENST00000359947 TTC9CQ8N5M4 171 aa12.77□□□□□ -0.36
PTPRF-201ENST00000359947 RNF182Q8N6D2 247 aa12.77□□□□□ -0.36
PTPRF-201ENST00000359947 RNF166Q96A37 237 aaPredicted RBP12.77□□□□□ -0.37
PTPRF-201ENST00000359947 LINC00614P0C842 121 aa12.77□□□□□ -0.37
PTPRF-201ENST00000359947 M0R1W7 72 aa12.77□□□□□ -0.37
PTPRF-201ENST00000359947 CCL1P22362 96 aa12.76□□□□□ -0.37
PTPRF-201ENST00000359947 CYSLTR1Q9Y271 337 aa12.76□□□□□ -0.37
PTPRF-201ENST00000359947 Q8TAT8 98 aa12.76□□□□□ -0.37
PTPRF-201ENST00000359947 PHLDA1Q8WV24 401 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-201ENST00000359947 LYPD3O95274 346 aa12.76□□□□□ -0.37
PTPRF-201ENST00000359947 NHLRC3Q5JS37 347 aa12.76□□□□□ -0.37
PTPRF-201ENST00000359947 ZNF876PQ49A33 203 aa12.76□□□□□ -0.37
PTPRF-201ENST00000359947 BMPERQ8N8U9 685 aa12.76□□□□□ -0.37
PTPRF-201ENST00000359947 PEF1Q9UBV8 284 aaKnown RBP12.76□□□□□ -0.37
PTPRF-201ENST00000359947 VWA8A3KMH1 1905 aa12.76□□□□□ -0.37
PTPRF-201ENST00000359947 C1orf122Q6ZSJ8 110 aa12.76□□□□□ -0.37
PTPRF-201ENST00000359947 SRP19P09132 144 aaKnown RBP12.75□□□□□ -0.37
PTPRF-201ENST00000359947 STAG3L3P0CL85 134 aa12.75□□□□□ -0.37
PTPRF-201ENST00000359947 MTURNQ8N3F0 131 aa12.75□□□□□ -0.37
PTPRF-201ENST00000359947 H0YJW9 148 aa12.75□□□□□ -0.37
PTPRF-201ENST00000359947 ZGRF1Q86YA3 2104 aa12.75□□□□□ -0.37
PTPRF-201ENST00000359947 SPATA31B1PQ5VZV4 182 aa12.75□□□□□ -0.37
PTPRF-201ENST00000359947 OVOL3O00110 214 aa12.75□□□□□ -0.37
PTPRF-201ENST00000359947 NCR2O95944 276 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 CR1LQ2VPA4 569 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 MGAMO43451 1857 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 HBDP02042 147 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 C17orf82Q86X59 251 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-201ENST00000359947 RHPN1-AS1Q9BWJ2 59 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 VSIRQ9H7M9 311 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 PAX2Q02962 417 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 F5H768 121 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 GBF1Q92538 1859 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 JPT2Q9H910 190 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 CHTOPQ9Y3Y2 248 aaKnown RBP12.74□□□□□ -0.37
PTPRF-201ENST00000359947 NR2C2APQ86WQ0 139 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 OR5A1Q8NGJ0 315 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 CLPSP04118 112 aa12.74□□□□□ -0.37
PTPRF-201ENST00000359947 A0A1B0GWB2 263 aa12.73□□□□□ -0.37
PTPRF-201ENST00000359947 DEFB131AP59861 70 aa12.73□□□□□ -0.37
PTPRF-201ENST00000359947 XCL2Q9UBD3 114 aa12.73□□□□□ -0.37
PTPRF-201ENST00000359947 IGKV1D-17A0A075B6S4 117 aa12.73□□□□□ -0.37
PTPRF-201ENST00000359947 A0A1B0GW15 77 aa12.73□□□□□ -0.37
PTPRF-201ENST00000359947 CD300EQ496F6 205 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-201ENST00000359947 ZNF362Q5T0B9 420 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-201ENST00000359947 INSP01308 110 aa12.73□□□□□ -0.37
PTPRF-201ENST00000359947 RPL23P62829 140 aaKnown RBP12.73□□□□□ -0.37
PTPRF-201ENST00000359947 RPL36AP83881 106 aaKnown RBP12.73□□□□□ -0.37
PTPRF-201ENST00000359947 RPL36ALQ969Q0 106 aaKnown RBP12.73□□□□□ -0.37
PTPRF-201ENST00000359947 CCL20P78556 96 aa12.73□□□□□ -0.37
PTPRF-201ENST00000359947 SPSB3Q6PJ21 355 aa12.73□□□□□ -0.37
PTPRF-201ENST00000359947 CGB3P0DN86 165 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 TMEM86BQ8N661 226 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 C1QL4Q86Z23 238 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 ZSWIM8A7E2V4 1837 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 GPR179Q6PRD1 2367 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 ADMP35318 185 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 A0A087WWL8 130 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 C1orf159Q96HA4 380 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 A0A1B0GWJ7 208 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 CDK2AP2O75956 126 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 USMG5Q96IX5 58 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 SIGLEC9Q9Y336 463 aa12.72□□□□□ -0.37
PTPRF-201ENST00000359947 FOXL1Q12952 345 aa12.71□□□□□ -0.37
PTPRF-201ENST00000359947 TCRAP04437 139 aa12.71□□□□□ -0.37
PTPRF-201ENST00000359947 LURAP1LQ8IV03 231 aa12.71□□□□□ -0.37
PTPRF-201ENST00000359947 RNF126Q9BV68 326 aa12.71□□□□□ -0.37
PTPRF-201ENST00000359947 TREML4Q6UXN2 200 aa12.71□□□□□ -0.37
PTPRF-201ENST00000359947 OCC1Q8TAD7 63 aa12.71□□□□□ -0.37
PTPRF-201ENST00000359947 ZNF581Q9P0T4 197 aa12.71□□□□□ -0.37
PTPRF-201ENST00000359947 GAS1P54826 345 aa12.71□□□□□ -0.38
PTPRF-201ENST00000359947 B3GALT5-AS1P59052 145 aa12.71□□□□□ -0.38
PTPRF-201ENST00000359947 PTPRDP23468 1912 aa12.71□□□□□ -0.38
PTPRF-201ENST00000359947 C1QTNF4Q9BXJ3 329 aa12.71□□□□□ -0.38
PTPRF-201ENST00000359947 PAX4O43316 350 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms