RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ZNF705DP0CH99 300 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-201ENST00000341247 ZNF705BP0CI00 300 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-201ENST00000341247 C11orf71Q6IPW1 123 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 LY6G5BQ8NDX9 201 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 SH2D7A6NKC9 451 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-201ENST00000341247 TSTD3H0UI37 97 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 I3L2K1 104 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 SSTP61278 116 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 CX3CL1P78423 397 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 C8orf46Q8TAG6 207 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 IGKV1-17P01599 117 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 SRIP30626 198 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 LINC00310P59036 64 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 LINC00322Q6ZN03 302 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-201ENST00000341247 TCF24Q7RTU0 167 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 SLC25A39Q9BZJ4 359 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-201ENST00000341247 CHODLQ9H9P2 273 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 GNB4Q9HAV0 340 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 IL4P05112 153 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 NDPQ00604 133 aa8.19□□□□□ -1.1
LIMA1-201ENST00000341247 IGHV3OR16-10A0A075B7F0 116 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 C19orf84I3L1E1 186 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 K7EIM0 57 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 GP9P14770 177 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 PMCHP20382 165 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 CEACAM3P40198 252 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 TAS2R60P59551 318 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 IQCJQ1A5X6 159 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 CFHR4Q92496 578 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 TMEM68Q96MH6 324 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 HSPB9Q9BQS6 159 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 GNLYP22749 145 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 PRTN3P24158 256 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 DDTP30046 118 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 FCGR2BP31994 310 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-201ENST00000341247 PKIAP61925 76 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 TMEM136Q6ZRR5 245 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 GOLT1AQ6ZVE7 132 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 RCHY1Q96PM5 261 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 ZNF331Q9NQX6 463 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-201ENST00000341247 ZNF586Q9NXT0 402 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 PRNTQ86SH4 94 aa8.18□□□□□ -1.1
LIMA1-201ENST00000341247 NEU4Q8WWR8 484 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-201ENST00000341247 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.18□□□□□ -1.1
LIMA1-201ENST00000341247 HIGD1CA8MV81 97 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 GNG7O60262 68 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 ZNF253O75346 499 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 SLAQ13239 276 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 C5orf64Q2M2E5 130 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 Q56UQ5 140 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 CIARTQ8N365 385 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-201ENST00000341247 NUP35Q8NFH5 326 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 OR11H6Q8NGC7 330 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 NEU1Q99519 415 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 ACACBO00763 2458 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 OR2J3O76001 311 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 FAM120AOSQ5T036 256 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 TOMM20LQ6UXN7 152 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 Q6ZWC4 215 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 FAM19A2Q8N3H0 131 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 STXBP6Q8NFX7 210 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 OR5R1Q8NH85 324 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 AMY1AP04745 511 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 NTF3P20783 257 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 USF2Q15853 346 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-201ENST00000341247 OR2D3Q8NGH3 330 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 C14orf144Q96I85 54 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 BPESC1Q9GZL8 116 aa8.17□□□□□ -1.1
LIMA1-201ENST00000341247 SMIM27A0A1W2PRY6 76 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 TCRAP04437 139 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 MYCNOSP40205 109 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 TMEM183BQ1AE95 376 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 GNB1LQ9BYB4 327 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 USP24Q9UPU5 2620 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 M0R3E3 92 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 BMPR1BO00238 502 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 APCSP02743 223 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 TMEM11P17152 192 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 KRTDAPP60985 99 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 TDRG1Q3Y452 100 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 GDF5OSQ5U4N7 250 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 C5orf17Q8NAS9 161 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 TBX15Q96SF7 602 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 IZUMO1RA6ND01 250 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 OR2T8A6NH00 312 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 HOXB4P17483 251 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-201ENST00000341247 TPPP2P59282 170 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 ARPC1AQ92747 370 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 PGLYRP4Q96LB8 373 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 GPR82Q96P67 336 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 ATG101Q9BSB4 218 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 NAGKQ9UJ70 344 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 RNF114Q9Y508 228 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 ABCA2Q9BZC7 2435 aa8.16□□□□□ -1.1
LIMA1-201ENST00000341247 TRAV9-1A0A075B6T8 112 aa8.15□□□□□ -1.1
LIMA1-201ENST00000341247 VWC2LB2RUY7 222 aa8.15□□□□□ -1.1
LIMA1-201ENST00000341247 AMTP48728 403 aa8.15□□□□□ -1.1
LIMA1-201ENST00000341247 RPL19P84098 196 aaKnown RBP8.15□□□□□ -1.1
LIMA1-201ENST00000341247 ECSCRQ19T08 205 aa8.15□□□□□ -1.1
LIMA1-201ENST00000341247 VN1R17PQ8TDU5 208 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms