RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 OVOL1O14753 267 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 IGHV2-5P01817 119 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 C5orf24Q7Z6I8 188 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 GGTLC3B5MD39 225 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 SRRM5B3KS81 715 aa14.25□□□□□ -0.13
SYNPO-201ENST00000307662 MBNL3Q9NUK0 354 aaKnown RBP14.24□□□□□ -0.13
SYNPO-201ENST00000307662 GFRA3O60609 400 aa14.24□□□□□ -0.13
SYNPO-201ENST00000307662 ZNF138P52744 262 aa14.24□□□□□ -0.13
SYNPO-201ENST00000307662 CSRP2Q16527 193 aa14.24□□□□□ -0.13
SYNPO-201ENST00000307662 CHAC1Q9BUX1 264 aa14.24□□□□□ -0.13
SYNPO-201ENST00000307662 SNRNP200O75643 2136 aaKnown RBP14.24□□□□□ -0.13
SYNPO-201ENST00000307662 PRB4P10163 310 aaPredicted RBP14.24□□□□□ -0.13
SYNPO-201ENST00000307662 TMEM167AQ8TBQ9 72 aa14.24□□□□□ -0.13
SYNPO-201ENST00000307662 SLC25A20O43772 301 aa14.24□□□□□ -0.13
SYNPO-201ENST00000307662 CLPSP04118 112 aa14.24□□□□□ -0.13
SYNPO-201ENST00000307662 COX6B1P14854 86 aa14.24□□□□□ -0.13
SYNPO-201ENST00000307662 SH2D1AO60880 128 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 DUSP14O95147 198 aaKnown RBP14.23□□□□□ -0.13
SYNPO-201ENST00000307662 SPINK8P0C7L1 97 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 PSG3Q16557 428 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 LINC00473A8K010 186 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 TIMM23O14925 209 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 GGNQ86UU5 652 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 PLEKHB2Q96CS7 222 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 Q6ZRM9 215 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 ZNF581Q9P0T4 197 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 MYOD1P15172 320 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 CD24P25063 80 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 ZC2HC1BQ5TFG8 222 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 MORN3Q6PF18 240 aaPredicted RBP14.23□□□□□ -0.13
SYNPO-201ENST00000307662 CCL19Q99731 98 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 KLHDC3Q9BQ90 382 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 A0A1B0GWJ7 208 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 PINLYPA6NC86 204 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 LILRA1O75019 489 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 ZNF329Q86UD4 541 aa14.23□□□□□ -0.13
SYNPO-201ENST00000307662 HAX1O00165 279 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 TOMM40O96008 361 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 MCRIP2Q9BUT9 160 aaKnown RBP14.22□□□□□ -0.13
SYNPO-201ENST00000307662 GFRA4Q9GZZ7 299 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 TRGV11A0A075B6L2 103 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 SIGLEC15Q6ZMC9 328 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 MESP1Q9BRJ9 268 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 TRGV2A0A075B6R0 118 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 A0A1B0GUS0 222 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 FOXG1P55316 489 aaPredicted RBP14.22□□□□□ -0.13
SYNPO-201ENST00000307662 C2orf82Q6UX34 121 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 Q6P435 159 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 TMEM158Q8WZ71 300 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 ABCA7Q8IZY2 2146 aa14.22□□□□□ -0.13
SYNPO-201ENST00000307662 ANK1P16157 1881 aa14.21□□□□□ -0.13
SYNPO-201ENST00000307662 NPSP0C0P6 89 aa14.21□□□□□ -0.13
SYNPO-201ENST00000307662 LSM4Q9Y4Z0 139 aaKnown RBP14.21□□□□□ -0.13
SYNPO-201ENST00000307662 ZDBF2Q9HCK1 2354 aa14.21□□□□□ -0.13
SYNPO-201ENST00000307662 MDC1Q14676 2089 aaKnown RBP14.21□□□□□ -0.13
SYNPO-201ENST00000307662 IGHV1-46P01743 117 aa14.21□□□□□ -0.13
SYNPO-201ENST00000307662 FNDC10F2Z333 226 aa14.21□□□□□ -0.13
SYNPO-201ENST00000307662 MLNRO43193 412 aa14.21□□□□□ -0.13
SYNPO-201ENST00000307662 CD177Q8N6Q3 437 aa14.21□□□□□ -0.13
SYNPO-201ENST00000307662 DOCK6Q96HP0 2047 aa14.21□□□□□ -0.13
SYNPO-201ENST00000307662 CFHR1Q03591 330 aa14.21□□□□□ -0.14
SYNPO-201ENST00000307662 ZFP36L1Q07352 338 aaKnown RBP14.21□□□□□ -0.14
SYNPO-201ENST00000307662 FAM231BA6NCW3 169 aa14.2□□□□□ -0.14
SYNPO-201ENST00000307662 A0A0U1RRA0 63 aa14.2□□□□□ -0.14
SYNPO-201ENST00000307662 TNFRSF6BO95407 300 aa14.2□□□□□ -0.14
SYNPO-201ENST00000307662 C18orf32Q8TCD1 76 aa14.2□□□□□ -0.14
SYNPO-201ENST00000307662 SIP14410 1827 aa14.2□□□□□ -0.14
SYNPO-201ENST00000307662 TMEM8BA6NDV4 472 aa14.2□□□□□ -0.14
SYNPO-201ENST00000307662 ASCL4Q6XD76 172 aa14.2□□□□□ -0.14
SYNPO-201ENST00000307662 IGLC2P0DOY2 106 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 IGLC3P0DOY3 106 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 RPL15P61313 204 aaKnown RBP14.19□□□□□ -0.14
SYNPO-201ENST00000307662 FHL1Q13642 323 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 LYPD1Q8N2G4 141 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 SPRR3Q9UBC9 169 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 FREM3P0C091 2139 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 PAX8Q06710 450 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 GAGE1Q13065 139 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 SLX1AQ9BQ83 275 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 PEMTQ9UBM1 199 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 ICE1Q9Y2F5 2266 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 SELLP14151 372 aa14.19□□□□□ -0.14
SYNPO-201ENST00000307662 C17orf82Q86X59 251 aaPredicted RBP14.19□□□□□ -0.14
SYNPO-201ENST00000307662 ZCCHC24Q8N2G6 241 aaKnown RBP14.19□□□□□ -0.14
SYNPO-201ENST00000307662 MALP21145 153 aa14.18□□□□□ -0.14
SYNPO-201ENST00000307662 COLCA1Q6ZS62 124 aa14.18□□□□□ -0.14
SYNPO-201ENST00000307662 AMN1Q8IY45 258 aa14.18□□□□□ -0.14
SYNPO-201ENST00000307662 DPH3P1Q9H4G8 78 aa14.18□□□□□ -0.14
SYNPO-201ENST00000307662 Q86TA4 180 aa14.18□□□□□ -0.14
SYNPO-201ENST00000307662 METRNQ9UJH8 293 aa14.18□□□□□ -0.14
SYNPO-201ENST00000307662 LGALS1P09382 135 aaKnown RBP14.18□□□□□ -0.14
SYNPO-201ENST00000307662 NPC2P61916 151 aa14.18□□□□□ -0.14
SYNPO-201ENST00000307662 STPG4Q8N801 248 aa14.18□□□□□ -0.14
SYNPO-201ENST00000307662 IGHV2-26A0A0B4J1V2 119 aa14.17□□□□□ -0.14
SYNPO-201ENST00000307662 Q6ZWC4 215 aa14.17□□□□□ -0.14
SYNPO-201ENST00000307662 ANAPC10Q9UM13 185 aa14.17□□□□□ -0.14
SYNPO-201ENST00000307662 H0YJW9 148 aa14.17□□□□□ -0.14
SYNPO-201ENST00000307662 TMEM86BQ8N661 226 aa14.17□□□□□ -0.14
SYNPO-201ENST00000307662 LIME1Q9H400 295 aa14.17□□□□□ -0.14
SYNPO-201ENST00000307662 E9PQ18 207 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms